Yang P - Search Results

1

A hierarchical approach to removal of unwanted variation for large-scale metabolomics data.

Kim T, Tang O, Vernon ST, Kott KA, Koay YC, Park J, James DE, Grieve SM, Speed TP, Yang P, Figtree GA, O'Sullivan JF, Yang JYH. Kim T, et al. Among authors: yang jyh, yang p. Nat Commun. 2021 Aug 17;12(1):4992. doi: 10.1038/s41467-021-25210-5. Nat Commun. 2021. PMID: 34404777 Free PMC article.

2

A dynamic wavelet-based algorithm for pre-processing tandem mass spectrometry data.

Wang P, Yang P, Arthur J, Yang JY. Wang P, et al. Among authors: yang p, yang jy. Bioinformatics. 2010 Sep 15;26(18):2242-9. doi: 10.1093/bioinformatics/btq403. Epub 2010 Jul 13. Bioinformatics. 2010. PMID: 20628072

3

Re-fraction: a machine learning approach for deterministic identification of protein homologues and splice variants in large-scale MS-based proteomics.

Yang P, Humphrey SJ, Fazakerley DJ, Prior MJ, Yang G, James DE, Yang JY. Yang P, et al. Among authors: yang jy, yang g. J Proteome Res. 2012 May 4;11(5):3035-45. doi: 10.1021/pr300072j. Epub 2012 Mar 30. J Proteome Res. 2012. PMID: 22428558

4

OCAP: an open comprehensive analysis pipeline for iTRAQ.

Wang P, Yang P, Yang JY. Wang P, et al. Among authors: yang p, yang jy. Bioinformatics. 2012 May 15;28(10):1404-5. doi: 10.1093/bioinformatics/bts150. Epub 2012 Mar 29. Bioinformatics. 2012. PMID: 22467906

5

Dynamic adipocyte phosphoproteome reveals that Akt directly regulates mTORC2.

Humphrey SJ, Yang G, Yang P, Fazakerley DJ, Stöckli J, Yang JY, James DE. Humphrey SJ, et al. Among authors: yang p, yang jy, yang g. Cell Metab. 2013 Jun 4;17(6):1009-1020. doi: 10.1016/j.cmet.2013.04.010. Epub 2013 May 16. Cell Metab. 2013. PMID: 23684622 Free PMC article.

6

Direction pathway analysis of large-scale proteomics data reveals novel features of the insulin action pathway.

Yang P, Patrick E, Tan SX, Fazakerley DJ, Burchfield J, Gribben C, Prior MJ, James DE, Hwa Yang Y. Yang P, et al. Bioinformatics. 2014 Mar 15;30(6):808-14. doi: 10.1093/bioinformatics/btt616. Epub 2013 Oct 27. Bioinformatics. 2014. PMID: 24167158 Free PMC article.

7

ISL1 regulates peroxisome proliferator-activated receptor γ activation and early adipogenesis via bone morphogenetic protein 4-dependent and -independent mechanisms.

Ma X, Yang P, Kaplan WH, Lee BH, Wu LE, Yang JY, Yasunaga M, Sato K, Chisholm DJ, James DE. Ma X, et al. Among authors: yang p, yang jy. Mol Cell Biol. 2014 Oct 1;34(19):3607-17. doi: 10.1128/MCB.00583-14. Epub 2014 Jul 21. Mol Cell Biol. 2014. PMID: 25047837 Free PMC article.

8

Knowledge-Based Analysis for Detecting Key Signaling Events from Time-Series Phosphoproteomics Data.

Yang P, Zheng X, Jayaswal V, Hu G, Yang JY, Jothi R. Yang P, et al. Among authors: yang jy. PLoS Comput Biol. 2015 Aug 7;11(8):e1004403. doi: 10.1371/journal.pcbi.1004403. eCollection 2015 Aug. PLoS Comput Biol. 2015. PMID: 26252020 Free PMC article.

9

Positive-unlabeled ensemble learning for kinase substrate prediction from dynamic phosphoproteomics data.

Yang P, Humphrey SJ, James DE, Yang YH, Jothi R. Yang P, et al. Among authors: yang yh. Bioinformatics. 2016 Jan 15;32(2):252-9. doi: 10.1093/bioinformatics/btv550. Epub 2015 Sep 22. Bioinformatics. 2016. PMID: 26395771 Free PMC article.

10

Global Phosphoproteomic Analysis of Human Skeletal Muscle Reveals a Network of Exercise-Regulated Kinases and AMPK Substrates.

Hoffman NJ, Parker BL, Chaudhuri R, Fisher-Wellman KH, Kleinert M, Humphrey SJ, Yang P, Holliday M, Trefely S, Fazakerley DJ, Stöckli J, Burchfield JG, Jensen TE, Jothi R, Kiens B, Wojtaszewski JF, Richter EA, James DE. Hoffman NJ, et al. Among authors: yang p. Cell Metab. 2015 Nov 3;22(5):922-35. doi: 10.1016/j.cmet.2015.09.001. Epub 2015 Oct 1. Cell Metab. 2015. PMID: 26437602 Free PMC article.

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