Arkin AP - Search Results

1

Deciphering Microbial Metal Toxicity Responses via Random Bar Code Transposon Site Sequencing and Activity-Based Metabolomics.

Thorgersen MP, Xue J, Majumder ELW, Trotter VV, Ge X, Poole FL 2nd, Owens TK, Lui LM, Nielsen TN, Arkin AP, Deutschbauer AM, Siuzdak G, Adams MWW. Thorgersen MP, et al. Among authors: arkin ap. Appl Environ Microbiol. 2021 Oct 14;87(21):e0103721. doi: 10.1128/AEM.01037-21. Epub 2021 Aug 25. Appl Environ Microbiol. 2021. PMID: 34432491 Free PMC article.

2

Genomics for environmental microbiology.

Deutschbauer AM, Chivian D, Arkin AP. Deutschbauer AM, et al. Among authors: arkin ap. Curr Opin Biotechnol. 2006 Jun;17(3):229-35. doi: 10.1016/j.copbio.2006.04.003. Epub 2006 May 2. Curr Opin Biotechnol. 2006. PMID: 16650754 Review.

3

Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism.

Tang YJ, Martin HG, Dehal PS, Deutschbauer A, Llora X, Meadows A, Arkin A, Keasling JD. Tang YJ, et al. Biotechnol Bioeng. 2009 Mar 1;102(4):1161-9. doi: 10.1002/bit.22129. Biotechnol Bioeng. 2009. PMID: 19031428

4

A universal TagModule collection for parallel genetic analysis of microorganisms.

Oh J, Fung E, Price MN, Dehal PS, Davis RW, Giaever G, Nislow C, Arkin AP, Deutschbauer A. Oh J, et al. Among authors: arkin ap. Nucleic Acids Res. 2010 Aug;38(14):e146. doi: 10.1093/nar/gkq419. Epub 2010 May 21. Nucleic Acids Res. 2010. PMID: 20494978 Free PMC article.

5

Evidence-based annotation of transcripts and proteins in the sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough.

Price MN, Deutschbauer AM, Kuehl JV, Liu H, Witkowska HE, Arkin AP. Price MN, et al. Among authors: arkin ap. J Bacteriol. 2011 Oct;193(20):5716-27. doi: 10.1128/JB.05563-11. Epub 2011 Aug 12. J Bacteriol. 2011. PMID: 21840973 Free PMC article.

6

Evidence-based annotation of gene function in Shewanella oneidensis MR-1 using genome-wide fitness profiling across 121 conditions.

Deutschbauer A, Price MN, Wetmore KM, Shao W, Baumohl JK, Xu Z, Nguyen M, Tamse R, Davis RW, Arkin AP. Deutschbauer A, et al. Among authors: arkin ap. PLoS Genet. 2011 Nov;7(11):e1002385. doi: 10.1371/journal.pgen.1002385. Epub 2011 Nov 17. PLoS Genet. 2011. PMID: 22125499 Free PMC article.

7

Draft genome sequence of Pelosinus fermentans JBW45, isolated during in situ stimulation for Cr(VI) reduction.

Bowen De León K, Young ML, Camilleri LB, Brown SD, Skerker JM, Deutschbauer AM, Arkin AP, Fields MW. Bowen De León K, et al. Among authors: arkin ap. J Bacteriol. 2012 Oct;194(19):5456-7. doi: 10.1128/JB.01224-12. J Bacteriol. 2012. PMID: 22965085 Free PMC article.

8

Metabolic footprinting of mutant libraries to map metabolite utilization to genotype.

Baran R, Bowen BP, Price MN, Arkin AP, Deutschbauer AM, Northen TR. Baran R, et al. Among authors: arkin ap. ACS Chem Biol. 2013 Jan 18;8(1):189-99. doi: 10.1021/cb300477w. Epub 2012 Oct 31. ACS Chem Biol. 2013. PMID: 23082955

9

Variation among Desulfovibrio species in electron transfer systems used for syntrophic growth.

Meyer B, Kuehl J, Deutschbauer AM, Price MN, Arkin AP, Stahl DA. Meyer B, et al. Among authors: arkin ap. J Bacteriol. 2013 Mar;195(5):990-1004. doi: 10.1128/JB.01959-12. Epub 2012 Dec 21. J Bacteriol. 2013. PMID: 23264581 Free PMC article.

10

Metallochaperones regulate intracellular copper levels.

Pang WL, Kaur A, Ratushny AV, Cvetkovic A, Kumar S, Pan M, Arkin AP, Aitchison JD, Adams MW, Baliga NS. Pang WL, et al. Among authors: arkin ap. PLoS Comput Biol. 2013;9(1):e1002880. doi: 10.1371/journal.pcbi.1002880. Epub 2013 Jan 17. PLoS Comput Biol. 2013. PMID: 23349626 Free PMC article.

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