Yang Y - Search Results

1

MUNIn: A statistical framework for identifying long-range chromatin interactions from multiple samples.

Liu W, Yang Y, Abnousi A, Zhang Q, Kubo N, Beem JSM, Li Y, Hu M. Liu W, et al. Among authors: yang y. HGG Adv. 2021 Jul 8;2(3):100036. doi: 10.1016/j.xhgg.2021.100036. Epub 2021 May 23. HGG Adv. 2021. PMID: 34485947 Free PMC article.

2

SAFE-clustering: Single-cell Aggregated (from Ensemble) clustering for single-cell RNA-seq data.

Yang Y, Huh R, Culpepper HW, Lin Y, Love MI, Li Y. Yang Y, et al. Bioinformatics. 2019 Apr 15;35(8):1269-1277. doi: 10.1093/bioinformatics/bty793. Bioinformatics. 2019. PMID: 30202935 Free PMC article.

3

MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments.

Juric I, Yu M, Abnousi A, Raviram R, Fang R, Zhao Y, Zhang Y, Qiu Y, Yang Y, Li Y, Ren B, Hu M. Juric I, et al. Among authors: yang y. PLoS Comput Biol. 2019 Apr 15;15(4):e1006982. doi: 10.1371/journal.pcbi.1006982. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30986246 Free PMC article.

4

Johnson ND, Huang L, Li R, Li Y, Yang Y, Kim HR, Grant C, Wu H, Whitsel EA, Kiel DP, Baccarelli AA, Jin P, Murabito JM, Conneely KN. Johnson ND, et al. Among authors: yang y. Epigenetics. 2020 Mar;15(3):294-306. doi: 10.1080/15592294.2019.1666651. Epub 2019 Sep 26. Epigenetics. 2020. PMID: 31506003 Free PMC article.

5

SAME-clustering: Single-cell Aggregated Clustering via Mixture Model Ensemble.

Huh R, Yang Y, Jiang Y, Shen Y, Li Y. Huh R, et al. Among authors: yang y. Nucleic Acids Res. 2020 Jan 10;48(1):86-95. doi: 10.1093/nar/gkz959. Nucleic Acids Res. 2020. PMID: 31777938 Free PMC article.

6

The circadian clock shapes the Arabidopsis transcriptome by regulating alternative splicing and alternative polyadenylation.

Yang Y, Li Y, Sancar A, Oztas O. Yang Y, et al. J Biol Chem. 2020 May 29;295(22):7608-7619. doi: 10.1074/jbc.RA120.013513. Epub 2020 Apr 17. J Biol Chem. 2020. PMID: 32303634 Free PMC article.

7

SMNN: batch effect correction for single-cell RNA-seq data via supervised mutual nearest neighbor detection.

Yang Y, Li G, Qian H, Wilhelmsen KC, Shen Y, Li Y. Yang Y, et al. Brief Bioinform. 2021 May 20;22(3):bbaa097. doi: 10.1093/bib/bbaa097. Brief Bioinform. 2021. PMID: 32591778 Free PMC article.

8

FIREcaller: Detecting frequently interacting regions from Hi-C data.

Crowley C, Yang Y, Qiu Y, Hu B, Abnousi A, Lipiński J, Plewczyński D, Wu D, Won H, Ren B, Hu M, Li Y. Crowley C, et al. Among authors: yang y. Comput Struct Biotechnol J. 2020 Dec 29;19:355-362. doi: 10.1016/j.csbj.2020.12.026. eCollection 2021. Comput Struct Biotechnol J. 2020. PMID: 33489005 Free PMC article.

9

HiC-ACT: improved detection of chromatin interactions from Hi-C data via aggregated Cauchy test.

Lagler TM, Abnousi A, Hu M, Yang Y, Li Y. Lagler TM, et al. Among authors: yang y. Am J Hum Genet. 2021 Feb 4;108(2):257-268. doi: 10.1016/j.ajhg.2021.01.009. Am J Hum Genet. 2021. PMID: 33545029 Free PMC article.

10

Super hotspots and super coldspots in the repair of UV-induced DNA damage in the human genome.

Jiang Y, Li W, Lindsey-Boltz LA, Yang Y, Li Y, Sancar A. Jiang Y, et al. Among authors: yang y. J Biol Chem. 2021 Jan-Jun;296:100581. doi: 10.1016/j.jbc.2021.100581. Epub 2021 Mar 23. J Biol Chem. 2021. PMID: 33771559 Free PMC article.

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