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Comparative genomics provides insights into the aquatic adaptations of mammals.
Yuan Y, Zhang Y, Zhang P, Liu C, Wang J, Gao H, Hoelzel AR, Seim I, Lv M, Lin M, Dong L, Gao H, Yang Z, Caruso F, Lin W, da Fonseca RR, Wang D, Wang X, Rasmussen MH, Liu M, Zheng J, Zhao L, Campos PF, Kang H, Iversen M, Song Y, Guo X, Guo J, Qin Y, Pan S, Xu Q, Meng L, A Y, Liu S, Lee SM, Liu X, Xu X, Yang H, Fan G, Wang K, Li S. Yuan Y, et al. Among authors: xu q, xu x. Proc Natl Acad Sci U S A. 2021 Sep 14;118(37):e2106080118. doi: 10.1073/pnas.2106080118. Proc Natl Acad Sci U S A. 2021. PMID: 34503999 Free PMC article.
The sacred lotus genome provides insights into the evolution of flowering plants.
Wang Y, Fan G, Liu Y, Sun F, Shi C, Liu X, Peng J, Chen W, Huang X, Cheng S, Liu Y, Liang X, Zhu H, Bian C, Zhong L, Lv T, Dong H, Liu W, Zhong X, Chen J, Quan Z, Wang Z, Tan B, Lin C, Mu F, Xu X, Ding Y, Guo AY, Wang J, Ke W. Wang Y, et al. Among authors: xu x. Plant J. 2013 Nov;76(4):557-67. doi: 10.1111/tpj.12313. Epub 2013 Oct 11. Plant J. 2013. PMID: 23952714 Free article.
The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers.
Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, Becker A, Bräutigam A, Weber AP, Shi C, Zheng Z, Li W, Lv M, Tao Y, Wang J, Zou H, Quan Z, Hibberd JM, Zhang G, Zhu XG, Xu X, Schranz ME. Cheng S, et al. Among authors: xu x, xu j. Plant Cell. 2013 Aug;25(8):2813-30. doi: 10.1105/tpc.113.113480. Epub 2013 Aug 27. Plant Cell. 2013. PMID: 23983221 Free PMC article.
Baiji genomes reveal low genetic variability and new insights into secondary aquatic adaptations.
Zhou X, Sun F, Xu S, Fan G, Zhu K, Liu X, Chen Y, Shi C, Yang Y, Huang Z, Chen J, Hou H, Guo X, Chen W, Chen Y, Wang X, Lv T, Yang D, Zhou J, Huang B, Wang Z, Zhao W, Tian R, Xiong Z, Xu J, Liang X, Chen B, Liu W, Wang J, Pan S, Fang X, Li M, Wei F, Xu X, Zhou K, Wang J, Yang G. Zhou X, et al. Among authors: xu s, xu x, xu j. Nat Commun. 2013;4:2708. doi: 10.1038/ncomms3708. Nat Commun. 2013. PMID: 24169659 Free PMC article.
Mudskipper genomes provide insights into the terrestrial adaptation of amphibious fishes.
You X, Bian C, Zan Q, Xu X, Liu X, Chen J, Wang J, Qiu Y, Li W, Zhang X, Sun Y, Chen S, Hong W, Li Y, Cheng S, Fan G, Shi C, Liang J, Tom Tang Y, Yang C, Ruan Z, Bai J, Peng C, Mu Q, Lu J, Fan M, Yang S, Huang Z, Jiang X, Fang X, Zhang G, Zhang Y, Polgar G, Yu H, Li J, Liu Z, Zhang G, Ravi V, Coon SL, Wang J, Yang H, Venkatesh B, Wang J, Shi Q. You X, et al. Among authors: xu x. Nat Commun. 2014 Dec 2;5:5594. doi: 10.1038/ncomms6594. Nat Commun. 2014. PMID: 25463417 Free PMC article.
Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution.
Li F, Fan G, Lu C, Xiao G, Zou C, Kohel RJ, Ma Z, Shang H, Ma X, Wu J, Liang X, Huang G, Percy RG, Liu K, Yang W, Chen W, Du X, Shi C, Yuan Y, Ye W, Liu X, Zhang X, Liu W, Wei H, Wei S, Huang G, Zhang X, Zhu S, Zhang H, Sun F, Wang X, Liang J, Wang J, He Q, Huang L, Wang J, Cui J, Song G, Wang K, Xu X, Yu JZ, Zhu Y, Yu S. Li F, et al. Among authors: xu x. Nat Biotechnol. 2015 May;33(5):524-30. doi: 10.1038/nbt.3208. Epub 2015 Apr 20. Nat Biotechnol. 2015. PMID: 25893780
The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis.
Lin S, Cheng S, Song B, Zhong X, Lin X, Li W, Li L, Zhang Y, Zhang H, Ji Z, Cai M, Zhuang Y, Shi X, Lin L, Wang L, Wang Z, Liu X, Yu S, Zeng P, Hao H, Zou Q, Chen C, Li Y, Wang Y, Xu C, Meng S, Xu X, Wang J, Yang H, Campbell DA, Sturm NR, Dagenais-Bellefeuille S, Morse D. Lin S, et al. Among authors: xu c, xu x. Science. 2015 Nov 6;350(6261):691-4. doi: 10.1126/science.aad0408. Science. 2015. PMID: 26542574 Free article.
Structural genomic changes underlie alternative reproductive strategies in the ruff (Philomachus pugnax).
Lamichhaney S, Fan G, Widemo F, Gunnarsson U, Thalmann DS, Hoeppner MP, Kerje S, Gustafson U, Shi C, Zhang H, Chen W, Liang X, Huang L, Wang J, Liang E, Wu Q, Lee SM, Xu X, Höglund J, Liu X, Andersson L. Lamichhaney S, et al. Among authors: xu x. Nat Genet. 2016 Jan;48(1):84-8. doi: 10.1038/ng.3430. Epub 2015 Nov 16. Nat Genet. 2016. PMID: 26569123
The Sinocyclocheilus cavefish genome provides insights into cave adaptation.
Yang J, Chen X, Bai J, Fang D, Qiu Y, Jiang W, Yuan H, Bian C, Lu J, He S, Pan X, Zhang Y, Wang X, You X, Wang Y, Sun Y, Mao D, Liu Y, Fan G, Zhang H, Chen X, Zhang X, Zheng L, Wang J, Cheng L, Chen J, Ruan Z, Li J, Yu H, Peng C, Ma X, Xu J, He Y, Xu Z, Xu P, Wang J, Yang H, Wang J, Whitten T, Xu X, Shi Q. Yang J, et al. Among authors: xu p, xu x, xu j, xu z. BMC Biol. 2016 Jan 4;14:1. doi: 10.1186/s12915-015-0223-4. BMC Biol. 2016. PMID: 26728391 Free PMC article.
The Asian arowana (Scleropages formosus) genome provides new insights into the evolution of an early lineage of teleosts.
Bian C, Hu Y, Ravi V, Kuznetsova IS, Shen X, Mu X, Sun Y, You X, Li J, Li X, Qiu Y, Tay BH, Thevasagayam NM, Komissarov AS, Trifonov V, Kabilov M, Tupikin A, Luo J, Liu Y, Song H, Liu C, Wang X, Gu D, Yang Y, Li W, Polgar G, Fan G, Zeng P, Zhang H, Xiong Z, Tang Z, Peng C, Ruan Z, Yu H, Chen J, Fan M, Huang Y, Wang M, Zhao X, Hu G, Yang H, Wang J, Wang J, Xu X, Song L, Xu G, Xu P, Xu J, O'Brien SJ, Orbán L, Venkatesh B, Shi Q. Bian C, et al. Among authors: xu p, xu g, xu x, xu j. Sci Rep. 2016 Apr 19;6:24501. doi: 10.1038/srep24501. Sci Rep. 2016. PMID: 27089831 Free PMC article.
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