Podbevsek P - Search Results

1

Small circular interfering RNAs (sciRNAs) as a potent therapeutic platform for gene-silencing.

Jahns H, Degaonkar R, Podbevsek P, Gupta S, Bisbe A, Aluri K, Szeto J, Kumar P, LeBlanc S, Racie T, Brown CR, Castoreno A, Guenther DC, Jadhav V, Maier MA, Plavec J, Egli M, Manoharan M, Zlatev I. Jahns H, et al. Among authors: podbevsek p. Nucleic Acids Res. 2021 Oct 11;49(18):10250-10264. doi: 10.1093/nar/gkab724. Nucleic Acids Res. 2021. PMID: 34508350 Free PMC article.

2

NMR evaluation of ammonium ion movement within a unimolecular G-quadruplex in solution.

Podbevsek P, Hud NV, Plavec J. Podbevsek P, et al. Nucleic Acids Res. 2007;35(8):2554-63. doi: 10.1093/nar/gkm138. Epub 2007 Apr 4. Nucleic Acids Res. 2007. PMID: 17412708 Free PMC article.

3

NMR study of ammonium ion binding to d[G3T4G4]2 and d[G4(T4G4)3] G-quadruplexes.

Podbevsek P, Sket P, Plavec J. Podbevsek P, et al. Nucleosides Nucleotides Nucleic Acids. 2007;26(10-12):1547-51. doi: 10.1080/15257770701545358. Nucleosides Nucleotides Nucleic Acids. 2007. PMID: 18066824

4

Stacking and not solely topology of T3 loops controls rigidity and ammonium ion movement within d(G4T3G4)2 G-quadruplex.

Podbevsek P, Sket P, Plavec J. Podbevsek P, et al. J Am Chem Soc. 2008 Oct 29;130(43):14287-93. doi: 10.1021/ja8048282. Epub 2008 Oct 4. J Am Chem Soc. 2008. PMID: 18834130

5

Solution-state structure of a fully alternately 2'-F/2'-OMe modified 42-nt dimeric siRNA construct.

Podbevsek P, Allerson CR, Bhat B, Plavec J. Podbevsek P, et al. Nucleic Acids Res. 2010 Nov;38(20):7298-307. doi: 10.1093/nar/gkq621. Epub 2010 Jul 12. Nucleic Acids Res. 2010. PMID: 20624819 Free PMC article.

6

Observation of water molecules within the bimolecular d(G₃CT₄G₃C)₂G-quadruplex.

Zavasnik J, Podbevsek P, Plavec J. Zavasnik J, et al. Among authors: podbevsek p. Biochemistry. 2011 May 17;50(19):4155-61. doi: 10.1021/bi200201n. Epub 2011 Apr 25. Biochemistry. 2011. PMID: 21491853

7

Identification and characterization of second-generation invader locked nucleic acids (LNAs) for mixed-sequence recognition of double-stranded DNA.

Sau SP, Madsen AS, Podbevsek P, Andersen NK, Kumar TS, Andersen S, Rathje RL, Anderson BA, Guenther DC, Karmakar S, Kumar P, Plavec J, Wengel J, Hrdlicka PJ. Sau SP, et al. Among authors: podbevsek p. J Org Chem. 2013 Oct 4;78(19):9560-70. doi: 10.1021/jo4015936. Epub 2013 Sep 25. J Org Chem. 2013. PMID: 24032477 Free PMC article.

8

KRAS promoter oligonucleotide with decoy activity dimerizes into a unique topology consisting of two G-quadruplex units.

Podbevšek P, Plavec J. Podbevšek P, et al. Nucleic Acids Res. 2016 Jan 29;44(2):917-25. doi: 10.1093/nar/gkv1359. Epub 2015 Dec 9. Nucleic Acids Res. 2016. PMID: 26656490 Free PMC article.

9

Effects of metal ions and cosolutes on G-quadruplex topology.

Fujii T, Podbevšek P, Plavec J, Sugimoto N. Fujii T, et al. Among authors: podbevsek p. J Inorg Biochem. 2017 Jan;166:190-198. doi: 10.1016/j.jinorgbio.2016.09.001. Epub 2016 Sep 14. J Inorg Biochem. 2017. PMID: 27665315

10

Newly characterized interaction stabilizes DNA structure: oligoethylene glycols stabilize G-quadruplexes CH-π interactions.

Tateishi-Karimata H, Ohyama T, Muraoka T, Podbevsek P, Wawro AM, Tanaka S, Nakano SI, Kinbara K, Plavec J, Sugimoto N. Tateishi-Karimata H, et al. Among authors: podbevsek p. Nucleic Acids Res. 2017 Jul 7;45(12):7021-7030. doi: 10.1093/nar/gkx299. Nucleic Acids Res. 2017. PMID: 28453855 Free PMC article.

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