Baker R - Search Results

1

Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition.

Lou YC, Olm MR, Diamond S, Crits-Christoph A, Firek BA, Baker R, Morowitz MJ, Banfield JF. Lou YC, et al. Among authors: baker r. Cell Rep Med. 2021 Sep 7;2(9):100393. doi: 10.1016/j.xcrm.2021.100393. eCollection 2021 Sep 21. Cell Rep Med. 2021. PMID: 34622230 Free PMC article.

2

Necrotizing enterocolitis is preceded by increased gut bacterial replication, Klebsiella, and fimbriae-encoding bacteria.

Olm MR, Bhattacharya N, Crits-Christoph A, Firek BA, Baker R, Song YS, Morowitz MJ, Banfield JF. Olm MR, et al. Among authors: baker r. Sci Adv. 2019 Dec 11;5(12):eaax5727. doi: 10.1126/sciadv.aax5727. eCollection 2019 Dec. Sci Adv. 2019. PMID: 31844663 Free PMC article.

3

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut.

Sher Y, Olm MR, Raveh-Sadka T, Brown CT, Sher R, Firek B, Baker R, Morowitz MJ, Banfield JF. Sher Y, et al. Among authors: baker r. PLoS One. 2020 Mar 4;15(3):e0229537. doi: 10.1371/journal.pone.0229537. eCollection 2020. PLoS One. 2020. PMID: 32130257 Free PMC article.

4

Evidence for persistent and shared bacterial strains against a background of largely unique gut colonization in hospitalized premature infants.

Raveh-Sadka T, Firek B, Sharon I, Baker R, Brown CT, Thomas BC, Morowitz MJ, Banfield JF. Raveh-Sadka T, et al. Among authors: baker r. ISME J. 2016 Dec;10(12):2817-2830. doi: 10.1038/ismej.2016.83. Epub 2016 Jun 3. ISME J. 2016. PMID: 27258951 Free PMC article.

5

Identical bacterial populations colonize premature infant gut, skin, and oral microbiomes and exhibit different in situ growth rates.

Olm MR, Brown CT, Brooks B, Firek B, Baker R, Burstein D, Soenjoyo K, Thomas BC, Morowitz M, Banfield JF. Olm MR, et al. Among authors: baker r. Genome Res. 2017 Apr;27(4):601-612. doi: 10.1101/gr.213256.116. Epub 2017 Jan 10. Genome Res. 2017. PMID: 28073918 Free PMC article.

6

Strain-resolved analysis of hospital rooms and infants reveals overlap between the human and room microbiome.

Brooks B, Olm MR, Firek BA, Baker R, Thomas BC, Morowitz MJ, Banfield JF. Brooks B, et al. Among authors: baker r. Nat Commun. 2017 Nov 27;8(1):1814. doi: 10.1038/s41467-017-02018-w. Nat Commun. 2017. PMID: 29180750 Free PMC article.

7

Hospitalized Premature Infants Are Colonized by Related Bacterial Strains with Distinct Proteomic Profiles.

Brown CT, Xiong W, Olm MR, Thomas BC, Baker R, Firek B, Morowitz MJ, Hettich RL, Banfield JF. Brown CT, et al. Among authors: baker r. mBio. 2018 Apr 10;9(2):e00441-18. doi: 10.1128/mBio.00441-18. mBio. 2018. PMID: 29636439 Free PMC article.

8

The developing premature infant gut microbiome is a major factor shaping the microbiome of neonatal intensive care unit rooms.

Brooks B, Olm MR, Firek BA, Baker R, Geller-McGrath D, Reimer SR, Soenjoyo KR, Yip JS, Dahan D, Thomas BC, Morowitz MJ, Banfield JF. Brooks B, et al. Among authors: baker r. Microbiome. 2018 Jun 20;6(1):112. doi: 10.1186/s40168-018-0493-5. Microbiome. 2018. PMID: 29925423 Free PMC article.

9

Genome-resolved metagenomics of eukaryotic populations during early colonization of premature infants and in hospital rooms.

Olm MR, West PT, Brooks B, Firek BA, Baker R, Morowitz MJ, Banfield JF. Olm MR, et al. Among authors: baker r. Microbiome. 2019 Feb 15;7(1):26. doi: 10.1186/s40168-019-0638-1. Microbiome. 2019. PMID: 30770768 Free PMC article.

10

Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants.

Gopalakrishna KP, Macadangdang BR, Rogers MB, Tometich JT, Firek BA, Baker R, Ji J, Burr AHP, Ma C, Good M, Morowitz MJ, Hand TW. Gopalakrishna KP, et al. Among authors: baker r. Nat Med. 2019 Jul;25(7):1110-1115. doi: 10.1038/s41591-019-0480-9. Epub 2019 Jun 17. Nat Med. 2019. PMID: 31209335 Free PMC article.

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