Lou YC - Search Results

1

Infant gut strain persistence is associated with maternal origin, phylogeny, and traits including surface adhesion and iron acquisition.

Lou YC, Olm MR, Diamond S, Crits-Christoph A, Firek BA, Baker R, Morowitz MJ, Banfield JF. Lou YC, et al. Cell Rep Med. 2021 Sep 7;2(9):100393. doi: 10.1016/j.xcrm.2021.100393. eCollection 2021 Sep 21. Cell Rep Med. 2021. PMID: 34622230 Free PMC article.

2

Genome Sequencing of Sewage Detects Regionally Prevalent SARS-CoV-2 Variants.

Crits-Christoph A, Kantor RS, Olm MR, Whitney ON, Al-Shayeb B, Lou YC, Flamholz A, Kennedy LC, Greenwald H, Hinkle A, Hetzel J, Spitzer S, Koble J, Tan A, Hyde F, Schroth G, Kuersten S, Banfield JF, Nelson KL. Crits-Christoph A, et al. Among authors: lou yc. mBio. 2021 Jan 19;12(1):e02703-20. doi: 10.1128/mBio.02703-20. mBio. 2021. PMID: 33468686 Free PMC article.

3

Genetic and behavioral adaptation of Candida parapsilosis to the microbiome of hospitalized infants revealed by in situ genomics, transcriptomics, and proteomics.

West PT, Peters SL, Olm MR, Yu FB, Gause H, Lou YC, Firek BA, Baker R, Johnson AD, Morowitz MJ, Hettich RL, Banfield JF. West PT, et al. Among authors: lou yc. Microbiome. 2021 Jun 21;9(1):142. doi: 10.1186/s40168-021-01085-y. Microbiome. 2021. PMID: 34154658 Free PMC article.

4

Species- and site-specific genome editing in complex bacterial communities.

Rubin BE, Diamond S, Cress BF, Crits-Christoph A, Lou YC, Borges AL, Shivram H, He C, Xu M, Zhou Z, Smith SJ, Rovinsky R, Smock DCJ, Tang K, Owens TK, Krishnappa N, Sachdeva R, Barrangou R, Deutschbauer AM, Banfield JF, Doudna JA. Rubin BE, et al. Among authors: lou yc. Nat Microbiol. 2022 Jan;7(1):34-47. doi: 10.1038/s41564-021-01014-7. Epub 2021 Dec 6. Nat Microbiol. 2022. PMID: 34873292 Free PMC article.

5

Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes.

Borges AL, Lou YC, Sachdeva R, Al-Shayeb B, Penev PI, Jaffe AL, Lei S, Santini JM, Banfield JF. Borges AL, et al. Among authors: lou yc. Nat Microbiol. 2022 Jun;7(6):918-927. doi: 10.1038/s41564-022-01128-6. Epub 2022 May 26. Nat Microbiol. 2022. PMID: 35618772 Free PMC article.

6

Using strain-resolved analysis to identify contamination in metagenomics data.

Lou YC, Hoff J, Olm MR, West-Roberts J, Diamond S, Firek BA, Morowitz MJ, Banfield JF. Lou YC, et al. Microbiome. 2023 Mar 2;11(1):36. doi: 10.1186/s40168-023-01477-2. Microbiome. 2023. PMID: 36864482 Free PMC article.

7

Contamination source modeling with SCRuB improves cancer phenotype prediction from microbiome data.

Austin GI, Park H, Meydan Y, Seeram D, Sezin T, Lou YC, Firek BA, Morowitz MJ, Banfield JF, Christiano AM, Pe'er I, Uhlemann AC, Shenhav L, Korem T. Austin GI, et al. Among authors: lou yc. Nat Biotechnol. 2023 Dec;41(12):1820-1828. doi: 10.1038/s41587-023-01696-w. Epub 2023 Mar 16. Nat Biotechnol. 2023. PMID: 36928429 Free PMC article.

8

Infant microbiome cultivation and metagenomic analysis reveal Bifidobacterium 2'-fucosyllactose utilization can be facilitated by coexisting species.

Lou YC, Rubin BE, Schoelmerich MC, DiMarco KS, Borges AL, Rovinsky R, Song L, Doudna JA, Banfield JF. Lou YC, et al. Nat Commun. 2023 Nov 16;14(1):7417. doi: 10.1038/s41467-023-43279-y. Nat Commun. 2023. PMID: 37973815 Free PMC article.

9

Infant gut DNA bacteriophage strain persistence during the first 3 years of life.

Lou YC, Chen L, Borges AL, West-Roberts J, Firek BA, Morowitz MJ, Banfield JF. Lou YC, et al. Cell Host Microbe. 2024 Jan 10;32(1):35-47.e6. doi: 10.1016/j.chom.2023.11.015. Epub 2023 Dec 13. Cell Host Microbe. 2024. PMID: 38096814 Free article.

10

Burden landscape of hepatobiliary and pancreatic cancers in Chinese young adults: 30 years' overview and forecasted trends.

Chen DS, Chen ZP, Zhu DZ, Guan LX, Zhu Q, Lou YC, He ZP, Chen HN, Sun HC. Chen DS, et al. Among authors: lou yc. World J Gastrointest Oncol. 2024 Oct 15;16(10):4177-4193. doi: 10.4251/wjgo.v16.i10.4177. World J Gastrointest Oncol. 2024. PMID: 39473941 Free PMC article.

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