Eren AM - Search Results

1

Heterotrophic bacterial diazotrophs are more abundant than their cyanobacterial counterparts in metagenomes covering most of the sunlit ocean.

Delmont TO, Pierella Karlusich JJ, Veseli I, Fuessel J, Eren AM, Foster RA, Bowler C, Wincker P, Pelletier E. Delmont TO, et al. Among authors: eren am. ISME J. 2022 Apr;16(4):927-936. doi: 10.1038/s41396-021-01135-1. Epub 2021 Oct 25. ISME J. 2022. PMID: 34697433 Free PMC article.

2

Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences.

Eren AM, Morrison HG, Lescault PJ, Reveillaud J, Vineis JH, Sogin ML. Eren AM, et al. ISME J. 2015 Mar 17;9(4):968-79. doi: 10.1038/ismej.2014.195. ISME J. 2015. PMID: 25325381 Free PMC article.

3

Reconstructing rare soil microbial genomes using in situ enrichments and metagenomics.

Delmont TO, Eren AM, Maccario L, Prestat E, Esen ÖC, Pelletier E, Le Paslier D, Simonet P, Vogel TM. Delmont TO, et al. Among authors: eren am. Front Microbiol. 2015 Apr 30;6:358. doi: 10.3389/fmicb.2015.00358. eCollection 2015. Front Microbiol. 2015. PMID: 25983722 Free PMC article.

4

Anvi'o: an advanced analysis and visualization platform for 'omics data.

Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO. Eren AM, et al. PeerJ. 2015 Oct 8;3:e1319. doi: 10.7717/peerj.1319. eCollection 2015. PeerJ. 2015. PMID: 26500826 Free PMC article.

5

Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica.

Delmont TO, Eren AM, Vineis JH, Post AF. Delmont TO, et al. Among authors: eren am. Front Microbiol. 2015 Oct 26;6:1090. doi: 10.3389/fmicb.2015.01090. eCollection 2015. Front Microbiol. 2015. PMID: 26579075 Free PMC article.

6

Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies.

Delmont TO, Eren AM. Delmont TO, et al. Among authors: eren am. PeerJ. 2016 Mar 29;4:e1839. doi: 10.7717/peerj.1839. eCollection 2016. PeerJ. 2016. PMID: 27069789 Free PMC article.

7

Patient-Specific Bacteroides Genome Variants in Pouchitis.

Vineis JH, Ringus DL, Morrison HG, Delmont TO, Dalal S, Raffals LH, Antonopoulos DA, Rubin DT, Eren AM, Chang EB, Sogin ML. Vineis JH, et al. Among authors: eren am. mBio. 2016 Nov 15;7(6):e01713-16. doi: 10.1128/mBio.01713-16. mBio. 2016. PMID: 27935837 Free PMC article.

8

Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics.

Lee STM, Kahn SA, Delmont TO, Shaiber A, Esen ÖC, Hubert NA, Morrison HG, Antonopoulos DA, Rubin DT, Eren AM. Lee STM, et al. Among authors: eren am. Microbiome. 2017 May 4;5(1):50. doi: 10.1186/s40168-017-0270-x. Microbiome. 2017. PMID: 28473000 Free PMC article.

9

Peripartum Antibiotics Promote Gut Dysbiosis, Loss of Immune Tolerance, and Inflammatory Bowel Disease in Genetically Prone Offspring.

Miyoshi J, Bobe AM, Miyoshi S, Huang Y, Hubert N, Delmont TO, Eren AM, Leone V, Chang EB. Miyoshi J, et al. Among authors: eren am. Cell Rep. 2017 Jul 11;20(2):491-504. doi: 10.1016/j.celrep.2017.06.060. Cell Rep. 2017. PMID: 28700948 Free PMC article.

10

DESMAN: a new tool for de novo extraction of strains from metagenomes.

Quince C, Delmont TO, Raguideau S, Alneberg J, Darling AE, Collins G, Eren AM. Quince C, et al. Among authors: eren am. Genome Biol. 2017 Sep 21;18(1):181. doi: 10.1186/s13059-017-1309-9. Genome Biol. 2017. PMID: 28934976 Free PMC article.

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