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OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.
Jackson R, Matentzoglu N, Overton JA, Vita R, Balhoff JP, Buttigieg PL, Carbon S, Courtot M, Diehl AD, Dooley DM, Duncan WD, Harris NL, Haendel MA, Lewis SE, Natale DA, Osumi-Sutherland D, Ruttenberg A, Schriml LM, Smith B, Stoeckert CJ Jr, Vasilevsky NA, Walls RL, Zheng J, Mungall CJ, Peters B. Jackson R, et al. Among authors: vita r. Database (Oxford). 2021 Oct 26;2021:baab069. doi: 10.1093/database/baab069. Database (Oxford). 2021. PMID: 34697637 Free PMC article.
The immune epitope database (IEDB) 3.0.
Vita R, Overton JA, Greenbaum JA, Ponomarenko J, Clark JD, Cantrell JR, Wheeler DK, Gabbard JL, Hix D, Sette A, Peters B. Vita R, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D405-12. doi: 10.1093/nar/gku938. Epub 2014 Oct 9. Nucleic Acids Res. 2015. PMID: 25300482 Free PMC article.
Reproducibility and conflicts in immune epitope data.
Vita R, Vasilevsky N, Bandrowski A, Haendel M, Sette A, Peters B. Vita R, et al. Immunology. 2016 Mar;147(3):349-54. doi: 10.1111/imm.12566. Epub 2016 Feb 5. Immunology. 2016. PMID: 26678806 Free PMC article.
An ontology for major histocompatibility restriction.
Vita R, Overton JA, Seymour E, Sidney J, Kaufman J, Tallmadge RL, Ellis S, Hammond J, Butcher GW, Sette A, Peters B. Vita R, et al. J Biomed Semantics. 2016 Jan 11;7:1. doi: 10.1186/s13326-016-0045-5. eCollection 2016. J Biomed Semantics. 2016. PMID: 26759709 Free PMC article.
The Ontology for Biomedical Investigations.
Bandrowski A, Brinkman R, Brochhausen M, Brush MH, Bug B, Chibucos MC, Clancy K, Courtot M, Derom D, Dumontier M, Fan L, Fostel J, Fragoso G, Gibson F, Gonzalez-Beltran A, Haendel MA, He Y, Heiskanen M, Hernandez-Boussard T, Jensen M, Lin Y, Lister AL, Lord P, Malone J, Manduchi E, McGee M, Morrison N, Overton JA, Parkinson H, Peters B, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, Schober D, Smith B, Soldatova LN, Stoeckert CJ Jr, Taylor CF, Torniai C, Turner JA, Vita R, Whetzel PL, Zheng J. Bandrowski A, et al. Among authors: vita r. PLoS One. 2016 Apr 29;11(4):e0154556. doi: 10.1371/journal.pone.0154556. eCollection 2016. PLoS One. 2016. PMID: 27128319 Free PMC article.
The Immune Epitope Database: How Data Are Entered and Retrieved.
Fleri W, Vaughan K, Salimi N, Vita R, Peters B, Sette A. Fleri W, et al. Among authors: vita r. J Immunol Res. 2017;2017:5974574. doi: 10.1155/2017/5974574. Epub 2017 May 29. J Immunol Res. 2017. PMID: 28634590 Free PMC article.
333 results