Pesole G - Search Results

1

Laniakea@ReCaS: exploring the potential of customisable Galaxy on-demand instances as a cloud-based service.

Tangaro MA, Mandreoli P, Chiara M, Donvito G, Antonacci M, Parisi A, Bianco A, Romano A, Bianchi DM, Cangelosi D, Uva P, Molineris I, Nosi V, Calogero RA, Alessandri L, Pedrini E, Mordenti M, Bonetti E, Sangiorgi L, Pesole G, Zambelli F. Tangaro MA, et al. Among authors: pesole g. BMC Bioinformatics. 2021 Nov 8;22(Suppl 15):544. doi: 10.1186/s12859-021-04401-3. BMC Bioinformatics. 2021. PMID: 34749633 Free PMC article.

2

MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes.

Pavesi G, Mereghetti P, Zambelli F, Stefani M, Mauri G, Pesole G. Pavesi G, et al. Among authors: pesole g. Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W566-70. doi: 10.1093/nar/gkl285. Nucleic Acids Res. 2006. PMID: 16845071 Free PMC article.

3

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.

Pavesi G, Zambelli F, Pesole G. Pavesi G, et al. Among authors: pesole g. BMC Bioinformatics. 2007 Feb 7;8:46. doi: 10.1186/1471-2105-8-46. BMC Bioinformatics. 2007. PMID: 17286865 Free PMC article.

4

Exalign: a new method for comparative analysis of exon-intron gene structures.

Pavesi G, Zambelli F, Caggese C, Pesole G. Pavesi G, et al. Among authors: pesole g. Nucleic Acids Res. 2008 May;36(8):e47. doi: 10.1093/nar/gkn153. Epub 2008 Apr 8. Nucleic Acids Res. 2008. PMID: 18397951 Free PMC article.

5

Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes.

Mignone F, Anselmo A, Donvito G, Maggi GP, Grillo G, Pesole G. Mignone F, et al. Among authors: pesole g. BMC Genomics. 2008 Jun 11;9:277. doi: 10.1186/1471-2164-9-277. BMC Genomics. 2008. PMID: 18547402 Free PMC article.

6

Pscan: finding over-represented transcription factor binding site motifs in sequences from co-regulated or co-expressed genes.

Zambelli F, Pesole G, Pavesi G. Zambelli F, et al. Among authors: pesole g. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W247-52. doi: 10.1093/nar/gkp464. Epub 2009 May 31. Nucleic Acids Res. 2009. PMID: 19487240 Free PMC article.

7

Assessment of orthologous splicing isoforms in human and mouse orthologous genes.

Zambelli F, Pavesi G, Gissi C, Horner DS, Pesole G. Zambelli F, et al. Among authors: pesole g. BMC Genomics. 2010 Oct 1;11:534. doi: 10.1186/1471-2164-11-534. BMC Genomics. 2010. PMID: 20920313 Free PMC article.

8

Motif discovery and transcription factor binding sites before and after the next-generation sequencing era.

Zambelli F, Pesole G, Pavesi G. Zambelli F, et al. Among authors: pesole g. Brief Bioinform. 2013 Mar;14(2):225-37. doi: 10.1093/bib/bbs016. Epub 2012 Apr 19. Brief Bioinform. 2013. PMID: 22517426 Free PMC article.

9

Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets.

Zambelli F, Prazzoli GM, Pesole G, Pavesi G. Zambelli F, et al. Among authors: pesole g. Nucleic Acids Res. 2012 Jul;40(Web Server issue):W510-5. doi: 10.1093/nar/gks483. Epub 2012 Jun 4. Nucleic Acids Res. 2012. PMID: 22669907 Free PMC article.

10

SVM²: an improved paired-end-based tool for the detection of small genomic structural variations using high-throughput single-genome resequencing data.

Chiara M, Pesole G, Horner DS. Chiara M, et al. Among authors: pesole g. Nucleic Acids Res. 2012 Oct;40(18):e145. doi: 10.1093/nar/gks606. Epub 2012 Jun 25. Nucleic Acids Res. 2012. PMID: 22735696 Free PMC article.

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