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Multivariable association discovery in population-scale meta-omics studies.
Mallick H, Rahnavard A, McIver LJ, Ma S, Zhang Y, Nguyen LH, Tickle TL, Weingart G, Ren B, Schwager EH, Chatterjee S, Thompson KN, Wilkinson JE, Subramanian A, Lu Y, Waldron L, Paulson JN, Franzosa EA, Bravo HC, Huttenhower C. Mallick H, et al. Among authors: rahnavard a. PLoS Comput Biol. 2021 Nov 16;17(11):e1009442. doi: 10.1371/journal.pcbi.1009442. eCollection 2021 Nov. PLoS Comput Biol. 2021. PMID: 34784344 Free PMC article.
Genome sequence of white spot syndrome virus (WSSV) infecting cultured black tiger shrimp (Penaeus monodon) in Bangladesh.
Islam SMR, Ahmed R, Sharmen F, Hossain MM, Chakma K, Tanni AA, Akash MAA, Hossain ME, Chowdhury MSN, Siddiki AZ, Hossain A, Mandal SC, Crandall KA, Rahnavard A, Sharifuzzaman S, Mannan A. Islam SMR, et al. Among authors: rahnavard a. Microbiol Resour Announc. 2024 Apr 11;13(4):e0121123. doi: 10.1128/mra.01211-23. Epub 2024 Mar 19. Microbiol Resour Announc. 2024. PMID: 38501780 Free PMC article.
Obese Individuals with and without Type 2 Diabetes Show Different Gut Microbial Functional Capacity and Composition.
Thingholm LB, Rühlemann MC, Koch M, Fuqua B, Laucke G, Boehm R, Bang C, Franzosa EA, Hübenthal M, Rahnavard A, Frost F, Lloyd-Price J, Schirmer M, Lusis AJ, Vulpe CD, Lerch MM, Homuth G, Kacprowski T, Schmidt CO, Nöthlings U, Karlsen TH, Lieb W, Laudes M, Franke A, Huttenhower C. Thingholm LB, et al. Among authors: rahnavard a. Cell Host Microbe. 2019 Aug 14;26(2):252-264.e10. doi: 10.1016/j.chom.2019.07.004. Epub 2019 Aug 6. Cell Host Microbe. 2019. PMID: 31399369 Free PMC article.
Omics community detection using multi-resolution clustering.
Rahnavard A, Chatterjee S, Sayoldin B, Crandall KA, Tekola-Ayele F, Mallick H. Rahnavard A, et al. Bioinformatics. 2021 Oct 25;37(20):3588-3594. doi: 10.1093/bioinformatics/btab317. Bioinformatics. 2021. PMID: 33974004 Free PMC article.
Discovery of bioactive microbial gene products in inflammatory bowel disease.
Zhang Y, Bhosle A, Bae S, McIver LJ, Pishchany G, Accorsi EK, Thompson KN, Arze C, Wang Y, Subramanian A, Kearney SM, Pawluk A, Plichta DR, Rahnavard A, Shafquat A, Xavier RJ, Vlamakis H, Garrett WS, Krueger A, Huttenhower C, Franzosa EA. Zhang Y, et al. Among authors: rahnavard a. Nature. 2022 Jun;606(7915):754-760. doi: 10.1038/s41586-022-04648-7. Epub 2022 May 25. Nature. 2022. PMID: 35614211 Free PMC article.
High-sensitivity pattern discovery in large, paired multiomic datasets.
Ghazi AR, Sucipto K, Rahnavard A, Franzosa EA, McIver LJ, Lloyd-Price J, Schwager E, Weingart G, Moon YS, Morgan XC, Waldron L, Huttenhower C. Ghazi AR, et al. Among authors: rahnavard a. Bioinformatics. 2022 Jun 24;38(Suppl 1):i378-i385. doi: 10.1093/bioinformatics/btac232. Bioinformatics. 2022. PMID: 35758795 Free PMC article.
33 results