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Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.
Van Den Bossche T, Kunath BJ, Schallert K, Schäpe SS, Abraham PE, Armengaud J, Arntzen MØ, Bassignani A, Benndorf D, Fuchs S, Giannone RJ, Griffin TJ, Hagen LH, Halder R, Henry C, Hettich RL, Heyer R, Jagtap P, Jehmlich N, Jensen M, Juste C, Kleiner M, Langella O, Lehmann T, Leith E, May P, Mesuere B, Miotello G, Peters SL, Pible O, Queiros PT, Reichl U, Renard BY, Schiebenhoefer H, Sczyrba A, Tanca A, Trappe K, Trezzi JP, Uzzau S, Verschaffelt P, von Bergen M, Wilmes P, Wolf M, Martens L, Muth T. Van Den Bossche T, et al. Among authors: fuchs s. Nat Commun. 2021 Dec 15;12(1):7305. doi: 10.1038/s41467-021-27542-8. Nat Commun. 2021. PMID: 34911965 Free PMC article.
Survey of metaproteomics software tools for functional microbiome analysis.
Sajulga R, Easterly C, Riffle M, Mesuere B, Muth T, Mehta S, Kumar P, Johnson J, Gruening BA, Schiebenhoefer H, Kolmeder CA, Fuchs S, Nunn BL, Rudney J, Griffin TJ, Jagtap PD. Sajulga R, et al. Among authors: fuchs s. PLoS One. 2020 Nov 10;15(11):e0241503. doi: 10.1371/journal.pone.0241503. eCollection 2020. PLoS One. 2020. PMID: 33170893 Free PMC article.
smORFer: a modular algorithm to detect small ORFs in prokaryotes.
Bartholomäus A, Kolte B, Mustafayeva A, Goebel I, Fuchs S, Benndorf D, Engelmann S, Ignatova Z. Bartholomäus A, et al. Among authors: fuchs s. Nucleic Acids Res. 2021 Sep 7;49(15):e89. doi: 10.1093/nar/gkab477. Nucleic Acids Res. 2021. PMID: 34125903 Free PMC article.
CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance.
Wittig A, Miranda F, Hölzer M, Altenburg T, Bartoszewicz JM, Beyvers S, Dieckmann MA, Genske U, Giese SH, Nowicka M, Richard H, Schiebenhoefer H, Schmachtenberg AJ, Sieben P, Tang M, Tembrockhaus J, Renard BY, Fuchs S. Wittig A, et al. Among authors: fuchs s. Bioinformatics. 2022 Sep 2;38(17):4223-4225. doi: 10.1093/bioinformatics/btac411. Bioinformatics. 2022. PMID: 35799354
Proteomic Signatures in Staphylococcus aureus.
Engelmann S, Fuchs S. Engelmann S, et al. Among authors: fuchs s. Methods Mol Biol. 2018;1841:113-130. doi: 10.1007/978-1-4939-8695-8_9. Methods Mol Biol. 2018. PMID: 30259483
Data visualization in environmental proteomics.
Mehlan H, Schmidt F, Weiss S, Schüler J, Fuchs S, Riedel K, Bernhardt J. Mehlan H, et al. Among authors: fuchs s. Proteomics. 2013 Oct;13(18-19):2805-21. doi: 10.1002/pmic.201300167. Proteomics. 2013. PMID: 23913834
1,981 results