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An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes.
Perez-Sepulveda BM, Heavens D, Pulford CV, Predeus AV, Low R, Webster H, Dykes GF, Schudoma C, Rowe W, Lipscombe J, Watkins C, Kumwenda B, Shearer N, Costigan K, Baker KS, Feasey NA, Hinton JCD, Hall N; 10KSG consortium. Perez-Sepulveda BM, et al. Among authors: predeus av. Genome Biol. 2021 Dec 21;22(1):349. doi: 10.1186/s13059-021-02536-3. Genome Biol. 2021. PMID: 34930397 Free PMC article.
Adding function to the genome of African Salmonella Typhimurium ST313 strain D23580.
Canals R, Hammarlöf DL, Kröger C, Owen SV, Fong WY, Lacharme-Lora L, Zhu X, Wenner N, Carden SE, Honeycutt J, Monack DM, Kingsley RA, Brownridge P, Chaudhuri RR, Rowe WPM, Predeus AV, Hokamp K, Gordon MA, Hinton JCD. Canals R, et al. Among authors: predeus av. PLoS Biol. 2019 Jan 15;17(1):e3000059. doi: 10.1371/journal.pbio.3000059. eCollection 2019 Jan. PLoS Biol. 2019. PMID: 30645593 Free PMC article.
Salmonella identified in pigs in Kenya and Malawi reveals the potential for zoonotic transmission in emerging pork markets.
Wilson CN, Pulford CV, Akoko J, Perez Sepulveda B, Predeus AV, Bevington J, Duncan P, Hall N, Wigley P, Feasey N, Pinchbeck G, Hinton JCD, Gordon MA, Fèvre EM. Wilson CN, et al. Among authors: predeus av. PLoS Negl Trop Dis. 2020 Nov 24;14(11):e0008796. doi: 10.1371/journal.pntd.0008796. eCollection 2020 Nov. PLoS Negl Trop Dis. 2020. PMID: 33232324 Free PMC article.
Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa.
Pulford CV, Perez-Sepulveda BM, Canals R, Bevington JA, Bengtsson RJ, Wenner N, Rodwell EV, Kumwenda B, Zhu X, Bennett RJ, Stenhouse GE, Malaka De Silva P, Webster HJ, Bengoechea JA, Dumigan A, Tran-Dien A, Prakash R, Banda HC, Alufandika L, Mautanga MP, Bowers-Barnard A, Beliavskaia AY, Predeus AV, Rowe WPM, Darby AC, Hall N, Weill FX, Gordon MA, Feasey NA, Baker KS, Hinton JCD. Pulford CV, et al. Among authors: predeus av. Nat Microbiol. 2021 Mar;6(3):327-338. doi: 10.1038/s41564-020-00836-1. Epub 2020 Dec 21. Nat Microbiol. 2021. PMID: 33349664 Free PMC article.
Salmonella enterica serovar Typhimurium ST313 sublineage 2.2 has emerged in Malawi with a characteristic gene expression signature and a fitness advantage.
Kumwenda B, Canals R, Predeus AV, Zhu X, Kröger C, Pulford C, Wenner N, Lora LL, Li Y, Owen SV, Everett D, Hokamp K, Heyderman RS, Ashton PM, Gordon MA, Msefula CL, Hinton JCD. Kumwenda B, et al. Among authors: predeus av. Microlife. 2024 Mar 28;5:uqae005. doi: 10.1093/femsml/uqae005. eCollection 2024. Microlife. 2024. PMID: 38623411 Free PMC article.
Chromosome-level genome assembly and structural variant analysis of two laboratory yeast strains from the Peterhof Genetic Collection lineage.
Barbitoff YA, Matveenko AG, Matiiv AB, Maksiutenko EM, Moskalenko SE, Drozdova PB, Polev DE, Beliavskaia AY, Danilov LG, Predeus AV, Zhouravleva GA. Barbitoff YA, et al. Among authors: predeus av. G3 (Bethesda). 2021 Apr 15;11(4):jkab029. doi: 10.1093/g3journal/jkab029. G3 (Bethesda). 2021. PMID: 33677552 Free PMC article.
Identification of Novel Candidate Markers of Type 2 Diabetes and Obesity in Russia by Exome Sequencing with a Limited Sample Size.
Barbitoff YA, Serebryakova EA, Nasykhova YA, Predeus AV, Polev DE, Shuvalova AR, Vasiliev EV, Urazov SP, Sarana AM, Scherbak SG, Gladyshev DV, Pokrovskaya MS, Sivakova OV, Meshkov AN, Drapkina OM, Glotov OS, Glotov AS. Barbitoff YA, et al. Among authors: predeus av. Genes (Basel). 2018 Aug 17;9(8):415. doi: 10.3390/genes9080415. Genes (Basel). 2018. PMID: 30126146 Free PMC article.
49 results