Stamatakis A - Search Results

1

SpeciesRax: A Tool for Maximum Likelihood Species Tree Inference from Gene Family Trees under Duplication, Transfer, and Loss.

Morel B, Schade P, Lutteropp S, Williams TA, Szöllősi GJ, Stamatakis A. Morel B, et al. Among authors: stamatakis a. Mol Biol Evol. 2022 Feb 3;39(2):msab365. doi: 10.1093/molbev/msab365. Mol Biol Evol. 2022. PMID: 35021210 Free PMC article.

2

Performance, accuracy, and Web server for evolutionary placement of short sequence reads under maximum likelihood.

Berger SA, Krompass D, Stamatakis A. Berger SA, et al. Among authors: stamatakis a. Syst Biol. 2011 May;60(3):291-302. doi: 10.1093/sysbio/syr010. Epub 2011 Mar 23. Syst Biol. 2011. PMID: 21436105 Free PMC article.

3

Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees.

Izquierdo-Carrasco F, Smith SA, Stamatakis A. Izquierdo-Carrasco F, et al. Among authors: stamatakis a. BMC Bioinformatics. 2011 Dec 13;12:470. doi: 10.1186/1471-2105-12-470. BMC Bioinformatics. 2011. PMID: 22165866 Free PMC article.

4

SweeD: likelihood-based detection of selective sweeps in thousands of genomes.

Pavlidis P, Živkovic D, Stamatakis A, Alachiotis N. Pavlidis P, et al. Among authors: stamatakis a. Mol Biol Evol. 2013 Sep;30(9):2224-34. doi: 10.1093/molbev/mst112. Epub 2013 Jun 18. Mol Biol Evol. 2013. PMID: 23777627 Free PMC article.

5

Novel information theory-based measures for quantifying incongruence among phylogenetic trees.

Salichos L, Stamatakis A, Rokas A. Salichos L, et al. Among authors: stamatakis a. Mol Biol Evol. 2014 May;31(5):1261-71. doi: 10.1093/molbev/msu061. Epub 2014 Feb 7. Mol Biol Evol. 2014. PMID: 24509691

6

ExaBayes: massively parallel bayesian tree inference for the whole-genome era.

Aberer AJ, Kobert K, Stamatakis A. Aberer AJ, et al. Among authors: stamatakis a. Mol Biol Evol. 2014 Oct;31(10):2553-6. doi: 10.1093/molbev/msu236. Epub 2014 Aug 18. Mol Biol Evol. 2014. PMID: 25135941 Free PMC article.

7

The phylogenetic likelihood library.

Flouri T, Izquierdo-Carrasco F, Darriba D, Aberer AJ, Nguyen LT, Minh BQ, Von Haeseler A, Stamatakis A. Flouri T, et al. Among authors: stamatakis a. Syst Biol. 2015 Mar;64(2):356-62. doi: 10.1093/sysbio/syu084. Epub 2014 Oct 30. Syst Biol. 2015. PMID: 25358969 Free PMC article.

8

Impacts of Terraces on Phylogenetic Inference.

Sanderson MJ, McMahon MM, Stamatakis A, Zwickl DJ, Steel M. Sanderson MJ, et al. Among authors: stamatakis a. Syst Biol. 2015 Sep;64(5):709-26. doi: 10.1093/sysbio/syv024. Epub 2015 May 20. Syst Biol. 2015. PMID: 25999395

9

Computing the Internode Certainty and Related Measures from Partial Gene Trees.

Kobert K, Salichos L, Rokas A, Stamatakis A. Kobert K, et al. Among authors: stamatakis a. Mol Biol Evol. 2016 Jun;33(6):1606-17. doi: 10.1093/molbev/msw040. Epub 2016 Feb 25. Mol Biol Evol. 2016. PMID: 26915959 Free PMC article.

10

Efficient Detection of Repeating Sites to Accelerate Phylogenetic Likelihood Calculations.

Kobert K, Stamatakis A, Flouri T. Kobert K, et al. Among authors: stamatakis a. Syst Biol. 2017 Mar 1;66(2):205-217. doi: 10.1093/sysbio/syw075. Syst Biol. 2017. PMID: 27576546 Free PMC article.

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