Prihoda D - Search Results

1

BioPhi: A platform for antibody design, humanization, and humanness evaluation based on natural antibody repertoires and deep learning.

Prihoda D, Maamary J, Waight A, Juan V, Fayadat-Dilman L, Svozil D, Bitton DA. Prihoda D, et al. MAbs. 2022 Jan-Dec;14(1):2020203. doi: 10.1080/19420862.2021.2020203. MAbs. 2022. PMID: 35133949 Free PMC article.

2

A deep learning genome-mining strategy for biosynthetic gene cluster prediction.

Hannigan GD, Prihoda D, Palicka A, Soukup J, Klempir O, Rampula L, Durcak J, Wurst M, Kotowski J, Chang D, Wang R, Piizzi G, Temesi G, Hazuda DJ, Woelk CH, Bitton DA. Hannigan GD, et al. Among authors: prihoda d. Nucleic Acids Res. 2019 Oct 10;47(18):e110. doi: 10.1093/nar/gkz654. Nucleic Acids Res. 2019. PMID: 31400112 Free PMC article.

3

The application potential of machine learning and genomics for understanding natural product diversity, chemistry, and therapeutic translatability.

Prihoda D, Maritz JM, Klempir O, Dzamba D, Woelk CH, Hazuda DJ, Bitton DA, Hannigan GD. Prihoda D, et al. Nat Prod Rep. 2021 Jun 23;38(6):1100-1108. doi: 10.1039/d0np00055h. Nat Prod Rep. 2021. PMID: 33245088 Review.

4

Mutation Maker, An Open Source Oligo Design Platform for Protein Engineering.

Hiraga K, Mejzlik P, Marcisin M, Vostrosablin N, Gromek A, Arnold J, Wiewiora S, Svarba R, Prihoda D, Clarova K, Klempir O, Navratil J, Tupa O, Vazquez-Otero A, Walas MW, Holy L, Spale M, Kotowski J, Dzamba D, Temesi G, Russell JH, Marshall NM, Murphy GS, Bitton DA. Hiraga K, et al. Among authors: prihoda d. ACS Synth Biol. 2021 Feb 19;10(2):357-370. doi: 10.1021/acssynbio.0c00542. Epub 2021 Jan 12. ACS Synth Biol. 2021. PMID: 33433999 Free article.

5

mRNAid, an open-source platform for therapeutic mRNA design and optimization strategies.

Vostrosablin N, Lim S, Gopal P, Brazdilova K, Parajuli S, Wei X, Gromek A, Prihoda D, Spale M, Muzdalo A, Greig J, Yeo C, Wardyn J, Mejzlik P, Henry B, Partridge AW, Bitton DA. Vostrosablin N, et al. Among authors: prihoda d. NAR Genom Bioinform. 2024 Mar 12;6(1):lqae028. doi: 10.1093/nargab/lqae028. eCollection 2024 Mar. NAR Genom Bioinform. 2024. PMID: 38482061 Free PMC article.

6

A machine learning strategy for the identification of key in silico descriptors and prediction models for IgG monoclonal antibody developability properties.

Waight AB, Prihoda D, Shrestha R, Metcalf K, Bailly M, Ancona M, Widatalla T, Rollins Z, Cheng AC, Bitton DA, Fayadat-Dilman L. Waight AB, et al. Among authors: prihoda d. MAbs. 2023 Jan-Dec;15(1):2248671. doi: 10.1080/19420862.2023.2248671. MAbs. 2023. PMID: 37610144 Free PMC article.

7

TraceTrack, an open-source software for batch processing, alignment and visualization of sanger sequencing chromatograms.

Brazdilova K, Prihoda D, Ton Q, Klock H, Bitton DA. Brazdilova K, et al. Among authors: prihoda d. Bioinform Adv. 2023 Jul 12;3(1):vbad083. doi: 10.1093/bioadv/vbad083. eCollection 2023. Bioinform Adv. 2023. PMID: 37456510 Free PMC article.

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