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Page 1
High-performance single-cell gene regulatory network inference at scale: the Inferelator 3.0.
Skok Gibbs C, Jackson CA, Saldi GA, Tjärnberg A, Shah A, Watters A, De Veaux N, Tchourine K, Yi R, Hamamsy T, Castro DM, Carriero N, Gorissen BL, Gresham D, Miraldi ER, Bonneau R. Skok Gibbs C, et al. Among authors: saldi ga. Bioinformatics. 2022 Apr 28;38(9):2519-2528. doi: 10.1093/bioinformatics/btac117. Bioinformatics. 2022. PMID: 35188184 Free PMC article.
A viral strategy for targeting and manipulating interneurons across vertebrate species.
Dimidschstein J, Chen Q, Tremblay R, Rogers SL, Saldi GA, Guo L, Xu Q, Liu R, Lu C, Chu J, Grimley JS, Krostag AR, Kaykas A, Avery MC, Rashid MS, Baek M, Jacob AL, Smith GB, Wilson DE, Kosche G, Kruglikov I, Rusielewicz T, Kotak VC, Mowery TM, Anderson SA, Callaway EM, Dasen JS, Fitzpatrick D, Fossati V, Long MA, Noggle S, Reynolds JH, Sanes DH, Rudy B, Feng G, Fishell G. Dimidschstein J, et al. Among authors: saldi ga. Nat Neurosci. 2016 Dec;19(12):1743-1749. doi: 10.1038/nn.4430. Epub 2016 Oct 31. Nat Neurosci. 2016. Update in: Nat Neurosci. 2017 Jun 27;20(7):1033. doi: 10.1038/nn0717-1033d PMID: 27798629 Free PMC article. Updated.
Addendum: A viral strategy for targeting and manipulating interneurons across vertebrate species.
Dimidschstein J, Chen Q, Tremblay R, Rogers SL, Saldi GA, Guo L, Xu Q, Liu R, Lu C, Chu J, Avery MC, Rashid MS, Baek M, Jacob AL, Smith GB, Wilson DE, Kosche G, Kruglikov I, Rusielewicz T, Kotak VC, Mowery TM, Anderson SA, Callaway EM, Dasen JS, Fitzpatrick D, Fossati V, Long MA, Noggle S, Reynolds JH, Sanes DH, Rudy B, Feng G, Fishell G. Dimidschstein J, et al. Among authors: saldi ga. Nat Neurosci. 2017 Jun 27;20(7):1033. doi: 10.1038/nn0717-1033d. Nat Neurosci. 2017. PMID: 28653689 No abstract available.
Corrigendum: A viral strategy for targeting and manipulating interneurons across vertebrate species.
Dimidschstein J, Chen Q, Tremblay R, Rogers SL, Saldi GA, Guo L, Xu Q, Liu R, Lu C, Chu J, Avery MC, Rashid MS, Baek M, Jacob AL, Smith GB, Wilson DE, Kosche G, Kruglikov I, Rusielewicz T, Kotak VC, Mowery TM, Anderson SA, Callaway EM, Dasen JS, Fitzpatrick D, Fossati V, Long MA, Noggle S, Reynolds JH, Sanes DH, Rudy B, Feng G, Fishell G. Dimidschstein J, et al. Among authors: saldi ga. Nat Neurosci. 2017 Jun 27;20(7):1033. doi: 10.1038/nn0717-1033c. Nat Neurosci. 2017. PMID: 28653691 No abstract available.
Cortical somatostatin interneuron subtypes form cell-type-specific circuits.
Wu SJ, Sevier E, Dwivedi D, Saldi GA, Hairston A, Yu S, Abbott L, Choi DH, Sherer M, Qiu Y, Shinde A, Lenahan M, Rizzo D, Xu Q, Barrera I, Kumar V, Marrero G, Prönneke A, Huang S, Kullander K, Stafford DA, Macosko E, Chen F, Rudy B, Fishell G. Wu SJ, et al. Among authors: saldi ga. Neuron. 2023 Sep 6;111(17):2675-2692.e9. doi: 10.1016/j.neuron.2023.05.032. Epub 2023 Jun 29. Neuron. 2023. PMID: 37390821 Free article.
MultiVI: deep generative model for the integration of multimodal data.
Ashuach T, Gabitto MI, Koodli RV, Saldi GA, Jordan MI, Yosef N. Ashuach T, et al. Among authors: saldi ga. Nat Methods. 2023 Aug;20(8):1222-1231. doi: 10.1038/s41592-023-01909-9. Epub 2023 Jun 29. Nat Methods. 2023. PMID: 37386189 Free PMC article.
Integrated multimodal cell atlas of Alzheimer's disease.
Gabitto MI, Travaglini KJ, Rachleff VM, Kaplan ES, Long B, Ariza J, Ding Y, Mahoney JT, Dee N, Goldy J, Melief EJ, Agrawal A, Kana O, Zhen X, Barlow ST, Brouner K, Campos J, Campos J, Carr AJ, Casper T, Chakrabarty R, Clark M, Cool J, Dalley R, Darvas M, Ding SL, Dolbeare T, Egdorf T, Esposito L, Ferrer R, Fleckenstein LE, Gala R, Gary A, Gelfand E, Gloe J, Guilford N, Guzman J, Hirschstein D, Ho W, Hupp M, Jarsky T, Johansen N, Kalmbach BE, Keene LM, Khawand S, Kilgore MD, Kirkland A, Kunst M, Lee BR, Leytze M, Mac Donald CL, Malone J, Maltzer Z, Martin N, McCue R, McMillen D, Mena G, Meyerdierks E, Meyers KP, Mollenkopf T, Montine M, Nolan AL, Nyhus JK, Olsen PA, Pacleb M, Pagan CM, Peña N, Pham T, Pom CA, Postupna N, Rimorin C, Ruiz A, Saldi GA, Schantz AM, Shapovalova NV, Sorensen SA, Staats B, Sullivan M, Sunkin SM, Thompson C, Tieu M, Ting JT, Torkelson A, Tran T, Valera Cuevas NJ, Walling-Bell S, Wang MQ, Waters J, Wilson AM, Xiao M, Haynor D, Gatto NM, Jayadev S, Mufti S, Ng L, Mukherjee S, Crane PK, Latimer CS, Levi BP, Smith KA, Close JL, Miller JA, Hodge RD, Larson EB, Grabowski TJ, Hawrylycz M, Keene CD, Lein ES. Gabitto MI, et al. Among authors: saldi ga. Nat Neurosci. 2024 Oct 14. doi: 10.1038/s41593-024-01774-5. Online ahead of print. Nat Neurosci. 2024. PMID: 39402379
Publisher Correction: Viral manipulation of functionally distinct interneurons in mice, non-human primates and humans.
Vormstein-Schneider D, Lin JD, Pelkey KA, Chittajallu R, Guo B, Arias-Garcia MA, Allaway K, Sakopoulos S, Schneider G, Stevenson O, Vergara J, Sharma J, Zhang Q, Franken TP, Smith J, Ibrahim LA, Mastro KJ, Sabri E, Huang S, Favuzzi E, Burbridge T, Xu Q, Guo L, Vogel I, Sanchez V, Saldi GA, Gorissen BL, Yuan X, Zaghloul KA, Devinsky O, Sabatini BL, Batista-Brito R, Reynolds J, Feng G, Fu Z, McBain CJ, Fishell G, Dimidschstein J. Vormstein-Schneider D, et al. Among authors: saldi ga. Nat Neurosci. 2022 Sep;25(9):1247. doi: 10.1038/s41593-022-01155-w. Nat Neurosci. 2022. PMID: 35945454 No abstract available.
13 results