Viehweger A - Search Results

1

Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using Oxford Nanopore's adaptive sequencing.

Marquet M, Zöllkau J, Pastuschek J, Viehweger A, Schleußner E, Makarewicz O, Pletz MW, Ehricht R, Brandt C. Marquet M, et al. Among authors: viehweger a. Sci Rep. 2022 Mar 7;12(1):4000. doi: 10.1038/s41598-022-08003-8. Sci Rep. 2022. PMID: 35256725 Free PMC article.

2

Assessing genetic diversity and similarity of 435 KPC-carrying plasmids.

Brandt C, Viehweger A, Singh A, Pletz MW, Wibberg D, Kalinowski J, Lerch S, Müller B, Makarewicz O. Brandt C, et al. Among authors: viehweger a. Sci Rep. 2019 Aug 2;9(1):11223. doi: 10.1038/s41598-019-47758-5. Sci Rep. 2019. PMID: 31375735 Free PMC article.

3

Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN).

Van Damme R, Hölzer M, Viehweger A, Müller B, Bongcam-Rudloff E, Brandt C. Van Damme R, et al. Among authors: viehweger a. PLoS Comput Biol. 2021 Feb 9;17(2):e1008716. doi: 10.1371/journal.pcbi.1008716. eCollection 2021 Feb. PLoS Comput Biol. 2021. PMID: 33561126 Free PMC article.

4

Chromosome-level genome assembly and transcriptome-based annotation of the oleaginous yeast Rhodotorula toruloides CBS 14.

Martín-Hernández GC, Müller B, Chmielarz M, Brandt C, Hölzer M, Viehweger A, Passoth V. Martín-Hernández GC, et al. Among authors: viehweger a. Genomics. 2021 Nov;113(6):4022-4027. doi: 10.1016/j.ygeno.2021.10.006. Epub 2021 Oct 11. Genomics. 2021. PMID: 34648882 Free article.

5

Context-aware genomic surveillance reveals hidden transmission of a carbapenemase-producing Klebsiella pneumoniae.

Viehweger A, Blumenscheit C, Lippmann N, Wyres KL, Brandt C, Hans JB, Hölzer M, Irber L, Gatermann S, Lübbert C, Pletz MW, Holt KE, König B. Viehweger A, et al. Microb Genom. 2021 Dec;7(12):000741. doi: 10.1099/mgen.0.000741. Microb Genom. 2021. PMID: 34913861 Free PMC article.

6

Near Chromosome-Level Genome Assembly and Annotation of Rhodotorula babjevae Strains Reveals High Intraspecific Divergence.

Martín-Hernández GC, Müller B, Brandt C, Hölzer M, Viehweger A, Passoth V. Martín-Hernández GC, et al. Among authors: viehweger a. J Fungi (Basel). 2022 Mar 22;8(4):323. doi: 10.3390/jof8040323. J Fungi (Basel). 2022. PMID: 35448555 Free PMC article.

7

What the Phage: a scalable workflow for the identification and analysis of phage sequences.

Marquet M, Hölzer M, Pletz MW, Viehweger A, Makarewicz O, Ehricht R, Brandt C. Marquet M, et al. Among authors: viehweger a. Gigascience. 2022 Nov 18;11:giac110. doi: 10.1093/gigascience/giac110. Gigascience. 2022. PMID: 36399058 Free PMC article.

8

Enhanced glycerol assimilation and lipid production in Rhodotorula toruloides CBS14 upon addition of hemicellulose primarily correlates with early transcription of energy-metabolism-related genes.

Martín-Hernández GC, Chmielarz M, Müller B, Brandt C, Viehweger A, Hölzer M, Passoth V. Martín-Hernández GC, et al. Among authors: viehweger a. Biotechnol Biofuels Bioprod. 2023 Mar 10;16(1):42. doi: 10.1186/s13068-023-02294-3. Biotechnol Biofuels Bioprod. 2023. PMID: 36899390 Free PMC article.

9

Nanopore-based enrichment of antimicrobial resistance genes - a case-based study.

Viehweger A, Marquet M, Hölzer M, Dietze N, Pletz MW, Brandt C. Viehweger A, et al. GigaByte. 2023 Jan 25;2023:gigabyte75. doi: 10.46471/gigabyte.75. eCollection 2023. GigaByte. 2023. PMID: 36949817 Free PMC article.

10

Managing and monitoring a pandemic: showcasing a practical approach for the genomic surveillance of SARS-CoV-2.

Jundzill M, Spott R, Lohde M, Hölzer M, Viehweger A, Brandt C. Jundzill M, et al. Among authors: viehweger a. Database (Oxford). 2023 Oct 16;2023:baad071. doi: 10.1093/database/baad071. Database (Oxford). 2023. PMID: 37847816 Free PMC article.

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