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Exploring the evolution of biochemical models at the network level.
Gebhardt T, Touré V, Waltemath D, Wolkenhauer O, Scharm M. Gebhardt T, et al. Among authors: wolkenhauer o. PLoS One. 2022 Mar 21;17(3):e0265735. doi: 10.1371/journal.pone.0265735. eCollection 2022. PLoS One. 2022. PMID: 35312734 Free PMC article.
Minimum Information About a Simulation Experiment (MIASE).
Waltemath D, Adams R, Beard DA, Bergmann FT, Bhalla US, Britten R, Chelliah V, Cooling MT, Cooper J, Crampin EJ, Garny A, Hoops S, Hucka M, Hunter P, Klipp E, Laibe C, Miller AK, Moraru I, Nickerson D, Nielsen P, Nikolski M, Sahle S, Sauro HM, Schmidt H, Snoep JL, Tolle D, Wolkenhauer O, Le Novère N. Waltemath D, et al. Among authors: wolkenhauer o. PLoS Comput Biol. 2011 Apr;7(4):e1001122. doi: 10.1371/journal.pcbi.1001122. Epub 2011 Apr 28. PLoS Comput Biol. 2011. PMID: 21552546 Free PMC article. No abstract available.
Improving the reuse of computational models through version control.
Waltemath D, Henkel R, Hälke R, Scharm M, Wolkenhauer O. Waltemath D, et al. Among authors: wolkenhauer o. Bioinformatics. 2013 Mar 15;29(6):742-8. doi: 10.1093/bioinformatics/btt018. Epub 2013 Jan 18. Bioinformatics. 2013. PMID: 23335018
Annotation-based feature extraction from sets of SBML models.
Alm R, Waltemath D, Wolfien M, Wolkenhauer O, Henkel R. Alm R, et al. Among authors: wolkenhauer o. J Biomed Semantics. 2015 Apr 15;6:20. doi: 10.1186/s13326-015-0014-4. eCollection 2015. J Biomed Semantics. 2015. PMID: 25904997 Free PMC article.
237 results