Spielman SJ - Search Results

1

The expanding network of mineral chemistry throughout earth history reveals global shifts in crustal chemistry during the Proterozoic.

Moore EK, Golden JJ, Morrison SM, Hao J, Spielman SJ. Moore EK, et al. Among authors: spielman sj. Sci Rep. 2022 Mar 23;12(1):4956. doi: 10.1038/s41598-022-08650-x. Sci Rep. 2022. PMID: 35322071 Free PMC article.

2

The evolving redox chemistry and bioavailability of vanadium in deep time.

Moore EK, Hao J, Spielman SJ, Yee N. Moore EK, et al. Among authors: spielman sj. Geobiology. 2020 Mar;18(2):127-138. doi: 10.1111/gbi.12375. Epub 2020 Feb 12. Geobiology. 2020. PMID: 32048807

3

Mineral Element Insiders and Outliers Play Crucial Roles in Biological Evolution.

Moore EK, Martinez DL, Srivastava N, Morrison SM, Spielman SJ. Moore EK, et al. Among authors: spielman sj. Life (Basel). 2022 Jun 24;12(7):951. doi: 10.3390/life12070951. Life (Basel). 2022. PMID: 35888041 Free PMC article.

4

Relative Model Fit Does Not Predict Topological Accuracy in Single-Gene Protein Phylogenetics.

Spielman SJ. Spielman SJ. Mol Biol Evol. 2020 Jul 1;37(7):2110-2123. doi: 10.1093/molbev/msaa075. Mol Biol Evol. 2020. PMID: 32191313 Free PMC article.

5

HyPhy 2.5-A Customizable Platform for Evolutionary Hypothesis Testing Using Phylogenies.

Kosakovsky Pond SL, Poon AFY, Velazquez R, Weaver S, Hepler NL, Murrell B, Shank SD, Magalis BR, Bouvier D, Nekrutenko A, Wisotsky S, Spielman SJ, Frost SDW, Muse SV. Kosakovsky Pond SL, et al. Among authors: spielman sj. Mol Biol Evol. 2020 Jan 1;37(1):295-299. doi: 10.1093/molbev/msz197. Mol Biol Evol. 2020. PMID: 31504749 Free PMC article.

6

Relative model selection of evolutionary substitution models can be sensitive to multiple sequence alignment uncertainty.

Spielman SJ, Miraglia ML. Spielman SJ, et al. BMC Ecol Evol. 2021 Nov 29;21(1):214. doi: 10.1186/s12862-021-01931-5. BMC Ecol Evol. 2021. PMID: 34844571 Free PMC article.

7

Relative Evolutionary Rates in Proteins Are Largely Insensitive to the Substitution Model.

Spielman SJ, Kosakovsky Pond SL. Spielman SJ, et al. Mol Biol Evol. 2018 Sep 1;35(9):2307-2317. doi: 10.1093/molbev/msy127. Mol Biol Evol. 2018. PMID: 29924340 Free PMC article.

8

The relationship between dN/dS and scaled selection coefficients.

Spielman SJ, Wilke CO. Spielman SJ, et al. Mol Biol Evol. 2015 Apr;32(4):1097-108. doi: 10.1093/molbev/msv003. Epub 2015 Jan 8. Mol Biol Evol. 2015. PMID: 25576365 Free PMC article.

9

Gain-of-function experiments with bacteriophage lambda uncover residues under diversifying selection in nature.

Maddamsetti R, Johnson DT, Spielman SJ, Petrie KL, Marks DS, Meyer JR. Maddamsetti R, et al. Among authors: spielman sj. Evolution. 2018 Oct;72(10):2234-2243. doi: 10.1111/evo.13586. Epub 2018 Sep 11. Evolution. 2018. PMID: 30152871 Free PMC article.

10

Limited utility of residue masking for positive-selection inference.

Spielman SJ, Dawson ET, Wilke CO. Spielman SJ, et al. Mol Biol Evol. 2014 Sep;31(9):2496-500. doi: 10.1093/molbev/msu183. Epub 2014 Jun 3. Mol Biol Evol. 2014. PMID: 24899665 Free PMC article.

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