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BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Shaikh B, Smith LP, Vasilescu D, Marupilla G, Wilson M, Agmon E, Agnew H, Andrews SS, Anwar A, Beber ME, Bergmann FT, Brooks D, Brusch L, Calzone L, Choi K, Cooper J, Detloff J, Drawert B, Dumontier M, Ermentrout GB, Faeder JR, Freiburger AP, Fröhlich F, Funahashi A, Garny A, Gennari JH, Gleeson P, Goelzer A, Haiman Z, Hasenauer J, Hellerstein JL, Hermjakob H, Hoops S, Ison JC, Jahn D, Jakubowski HV, Jordan R, Kalaš M, König M, Liebermeister W, Sheriff RSM, Mandal S, McDougal R, Medley JK, Mendes P, Müller R, Myers CJ, Naldi A, Nguyen TVN, Nickerson DP, Olivier BG, Patoliya D, Paulevé L, Petzold LR, Priya A, Rampadarath AK, Rohwer JM, Saglam AS, Singh D, Sinha A, Snoep J, Sorby H, Spangler R, Starruß J, Thomas PJ, van Niekerk D, Weindl D, Zhang F, Zhukova A, Goldberg AP, Schaff JC, Blinov ML, Sauro HM, Moraru II, Karr JR. Shaikh B, et al. Among authors: sorby h. Nucleic Acids Res. 2022 Jul 5;50(W1):W108-W114. doi: 10.1093/nar/gkac331. Nucleic Acids Res. 2022. PMID: 35524558 Free PMC article.
CellML 2.0.
Clerx M, Cooling MT, Cooper J, Garny A, Moyle K, Nickerson DP, Nielsen PMF, Sorby H. Clerx M, et al. Among authors: sorby h. J Integr Bioinform. 2020 Jul 24;17(2-3):20200021. doi: 10.1515/jib-2020-0021. J Integr Bioinform. 2020. PMID: 32759406 Free PMC article.
ICMA: an integrated cardiac modeling and analysis platform.
Hussan JR, Hunter PJ, Gladding PA, Greenberg N, Christie R, Wu A, Sorby H, Thomas JD. Hussan JR, et al. Among authors: sorby h. Bioinformatics. 2015 Apr 15;31(8):1331-3. doi: 10.1093/bioinformatics/btu809. Epub 2014 Dec 6. Bioinformatics. 2015. PMID: 25481009 Free PMC article.