Mohimani H - Search Results

1

An interpretable machine learning approach to identify mechanism of action of antibiotics.

Mongia M, Guler M, Mohimani H. Mongia M, et al. Among authors: mohimani h. Sci Rep. 2022 Jun 20;12(1):10342. doi: 10.1038/s41598-022-14229-3. Sci Rep. 2022. PMID: 35725893 Free PMC article.

2

Repository scale classification and decomposition of tandem mass spectral data.

Mongia M, Mohimani H. Mongia M, et al. Among authors: mohimani h. Sci Rep. 2021 Apr 15;11(1):8314. doi: 10.1038/s41598-021-87796-6. Sci Rep. 2021. PMID: 33859284 Free PMC article.

3

MolDiscovery: learning mass spectrometry fragmentation of small molecules.

Cao L, Guler M, Tagirdzhanov A, Lee YY, Gurevich A, Mohimani H. Cao L, et al. Among authors: mohimani h. Nat Commun. 2021 Jun 17;12(1):3718. doi: 10.1038/s41467-021-23986-0. Nat Commun. 2021. PMID: 34140479 Free PMC article.

4

Large scale sequence alignment via efficient inference in generative models.

Mongia M, Shen C, Davoodi AG, Marçais G, Mohimani H. Mongia M, et al. Among authors: mohimani h. Sci Rep. 2023 May 4;13(1):7285. doi: 10.1038/s41598-023-34257-x. Sci Rep. 2023. PMID: 37142645 Free PMC article.

5

AdenPredictor: accurate prediction of the adenylation domain specificity of nonribosomal peptide biosynthetic gene clusters in microbial genomes.

Mongia M, Baral R, Adduri A, Yan D, Liu Y, Bian Y, Kim P, Behsaz B, Mohimani H. Mongia M, et al. Among authors: mohimani h. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i40-i46. doi: 10.1093/bioinformatics/btad235. Bioinformatics. 2023. PMID: 37387149 Free PMC article.

6

HypoRiPPAtlas as an Atlas of hypothetical natural products for mass spectrometry database search.

Lee YY, Guler M, Chigumba DN, Wang S, Mittal N, Miller C, Krummenacher B, Liu H, Cao L, Kannan A, Narayan K, Slocum ST, Roth BL, Gurevich A, Behsaz B, Kersten RD, Mohimani H. Lee YY, et al. Among authors: mohimani h. Nat Commun. 2023 Jul 14;14(1):4219. doi: 10.1038/s41467-023-39905-4. Nat Commun. 2023. PMID: 37452020 Free PMC article.

7

Dereplication, sequencing and identification of peptidic natural products: from genome mining to peptidogenomics to spectral networks.

Mohimani H, Pevzner PA. Mohimani H, et al. Nat Prod Rep. 2016 Jan;33(1):73-86. doi: 10.1039/c5np00050e. Nat Prod Rep. 2016. PMID: 26497201 Free PMC article. Review.

8

A Metabolome- and Metagenome-Wide Association Network Reveals Microbial Natural Products and Microbial Biotransformation Products from the Human Microbiota.

Cao L, Shcherbin E, Mohimani H. Cao L, et al. Among authors: mohimani h. mSystems. 2019 Aug 27;4(4):e00387-19. doi: 10.1128/mSystems.00387-19. mSystems. 2019. PMID: 31455639 Free PMC article.

9

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.

Behsaz B, Bode E, Gurevich A, Shi YN, Grundmann F, Acharya D, Caraballo-Rodríguez AM, Bouslimani A, Panitchpakdi M, Linck A, Guan C, Oh J, Dorrestein PC, Bode HB, Pevzner PA, Mohimani H. Behsaz B, et al. Among authors: mohimani h. Nat Commun. 2021 May 28;12(1):3225. doi: 10.1038/s41467-021-23502-4. Nat Commun. 2021. PMID: 34050176 Free PMC article.

10

Multiplex de novo sequencing of peptide antibiotics.

Mohimani H, Liu WT, Yang YL, Gaudêncio SP, Fenical W, Dorrestein PC, Pevzner PA. Mohimani H, et al. J Comput Biol. 2011 Nov;18(11):1371-81. doi: 10.1089/cmb.2011.0158. Epub 2011 Oct 28. J Comput Biol. 2011. PMID: 22035290 Free PMC article.

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