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Super-enhancers: Asset management in immune cell genomes.
Witte S, O'Shea JJ, Vahedi G. Witte S, et al. Among authors: vahedi g. Trends Immunol. 2015 Sep;36(9):519-26. doi: 10.1016/j.it.2015.07.005. Epub 2015 Aug 12. Trends Immunol. 2015. PMID: 26277449 Free PMC article. Review.
Enhancing our understanding of enhancers in T-helper cells.
Paiano JJ, Johnson JL, Vahedi G. Paiano JJ, et al. Among authors: vahedi g. Eur J Immunol. 2015 Nov;45(11):2998-3001. doi: 10.1002/eji.201546035. Epub 2015 Oct 20. Eur J Immunol. 2015. PMID: 26444855 Free PMC article.
Identification and characterization of HIV-specific resident memory CD8+ T cells in human lymphoid tissue.
Buggert M, Nguyen S, Salgado-Montes de Oca G, Bengsch B, Darko S, Ransier A, Roberts ER, Del Alcazar D, Brody IB, Vella LA, Beura L, Wijeyesinghe S, Herati RS, Del Rio Estrada PM, Ablanedo-Terrazas Y, Kuri-Cervantes L, Sada Japp A, Manne S, Vartanian S, Huffman A, Sandberg JK, Gostick E, Nadolski G, Silvestri G, Canaday DH, Price DA, Petrovas C, Su LF, Vahedi G, Dori Y, Frank I, Itkin MG, Wherry EJ, Deeks SG, Naji A, Reyes-Terán G, Masopust D, Douek DC, Betts MR. Buggert M, et al. Among authors: vahedi g. Sci Immunol. 2018 Jun 1;3(24):eaar4526. doi: 10.1126/sciimmunol.aar4526. Sci Immunol. 2018. PMID: 29858286 Free PMC article.
Oncogenic Notch Promotes Long-Range Regulatory Interactions within Hyperconnected 3D Cliques.
Petrovic J, Zhou Y, Fasolino M, Goldman N, Schwartz GW, Mumbach MR, Nguyen SC, Rome KS, Sela Y, Zapataro Z, Blacklow SC, Kruhlak MJ, Shi J, Aster JC, Joyce EF, Little SC, Vahedi G, Pear WS, Faryabi RB. Petrovic J, et al. Among authors: vahedi g. Mol Cell. 2019 Mar 21;73(6):1174-1190.e12. doi: 10.1016/j.molcel.2019.01.006. Epub 2019 Feb 7. Mol Cell. 2019. PMID: 30745086 Free PMC article.
Genetic Variation in Type 1 Diabetes Reconfigures the 3D Chromatin Organization of T Cells and Alters Gene Expression.
Fasolino M, Goldman N, Wang W, Cattau B, Zhou Y, Petrovic J, Link VM, Cote A, Chandra A, Silverman M, Joyce EF, Little SC; HPAP Consortium; Kaestner KH, Naji A, Raj A, Henao-Mejia J, Faryabi RB, Vahedi G. Fasolino M, et al. Among authors: vahedi g. Immunity. 2020 Feb 18;52(2):257-274.e11. doi: 10.1016/j.immuni.2020.01.003. Epub 2020 Feb 11. Immunity. 2020. PMID: 32049053 Free PMC article.
TooManyCells identifies and visualizes relationships of single-cell clades.
Schwartz GW, Zhou Y, Petrovic J, Fasolino M, Xu L, Shaffer SM, Pear WS, Vahedi G, Faryabi RB. Schwartz GW, et al. Among authors: vahedi g. Nat Methods. 2020 Apr;17(4):405-413. doi: 10.1038/s41592-020-0748-5. Epub 2020 Mar 2. Nat Methods. 2020. PMID: 32123397 Free PMC article.
102 results