Peng S - Search Results

1

MinimapR: A parallel alignment tool for the analysis of large-scale third-generation sequencing data.

Wang Z, Cui Y, Peng S, Liao X, Yu Y. Wang Z, et al. Among authors: peng s. Comput Biol Chem. 2022 Aug;99:107735. doi: 10.1016/j.compbiolchem.2022.107735. Epub 2022 Jul 13. Comput Biol Chem. 2022. PMID: 35850048

2

B-MIC: An Ultrafast Three-Level Parallel Sequence Aligner Using MIC.

Cui Y, Liao X, Zhu X, Wang B, Peng S. Cui Y, et al. Among authors: peng s. Interdiscip Sci. 2016 Mar;8(1):28-34. doi: 10.1007/s12539-015-0278-5. Epub 2015 Sep 10. Interdiscip Sci. 2016. PMID: 26358141

3

A Hybrid Parallel Strategy Based on String Graph Theory to Improve De Novo DNA Assembly on the TianHe-2 Supercomputer.

Zhang F, Liao X, Peng S, Cui Y, Wang B, Zhu X, Liu J. Zhang F, et al. Among authors: peng s. Interdiscip Sci. 2016 Jun;8(2):169-176. doi: 10.1007/s12539-015-0127-6. Epub 2015 Sep 24. Interdiscip Sci. 2016. PMID: 26403255

4

Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework.

Su W, Liao X, Lu Y, Zou Q, Peng S. Su W, et al. Among authors: peng s. J Comput Biol. 2017 Dec;24(12):1230-1242. doi: 10.1089/cmb.2017.0040. Epub 2017 Nov 8. J Comput Biol. 2017. PMID: 29116822

5

P-Hint-Hunt: a deep parallelized whole genome DNA methylation detection tool.

Peng S, Yang S, Gao M, Liao X, Liu J, Yang C, Wu C, Yu W. Peng S, et al. BMC Genomics. 2017 Mar 14;18(Suppl 2):134. doi: 10.1186/s12864-017-3497-9. BMC Genomics. 2017. PMID: 28361696 Free PMC article.

6

Review of CRISPR/Cas9 sgRNA Design Tools.

Cui Y, Xu J, Cheng M, Liao X, Peng S. Cui Y, et al. Among authors: peng s. Interdiscip Sci. 2018 Jun;10(2):455-465. doi: 10.1007/s12539-018-0298-z. Epub 2018 Apr 11. Interdiscip Sci. 2018. PMID: 29644494 Review.

7

cmFSM: a scalable CPU-MIC coordinated drug-finding tool by frequent subgraph mining.

Yang S, Guo R, Liu R, Liao X, Zou Q, Shi B, Peng S. Yang S, et al. Among authors: peng s. BMC Bioinformatics. 2018 May 8;19(Suppl 4):98. doi: 10.1186/s12859-018-2071-z. BMC Bioinformatics. 2018. PMID: 29745832 Free PMC article.

8

Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture.

Peng S, Cheng M, Huang K, Cui Y, Zhang Z, Guo R, Zhang X, Yang S, Liao X, Lu Y, Zou Q, Shi B. Peng S, et al. BMC Bioinformatics. 2018 Aug 13;19(Suppl 9):282. doi: 10.1186/s12859-018-2276-1. BMC Bioinformatics. 2018. PMID: 30367570 Free PMC article.

9

OffScan: a universal and fast CRISPR off-target sites detection tool.

Cui Y, Liao X, Peng S, Tang T, Huang C, Yang C. Cui Y, et al. Among authors: peng s. BMC Genomics. 2020 Mar 5;21(Suppl 1):872. doi: 10.1186/s12864-019-6241-9. BMC Genomics. 2020. PMID: 32138651 Free PMC article.

10

VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments.

Cui Y, Wang Z, Köster J, Liao X, Peng S, Tang T, Huang C, Yang C. Cui Y, et al. Among authors: peng s. BMC Bioinformatics. 2021 Jun 24;22(1):344. doi: 10.1186/s12859-021-04275-5. BMC Bioinformatics. 2021. PMID: 34167459 Free PMC article.

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