Alm EJ - Search Results

1

MicrobiomeCensus estimates human population sizes from wastewater samples based on inter-individual variability in gut microbiomes.

Zhang L, Chen L, Yu XA, Duvallet C, Isazadeh S, Dai C, Park S, Frois-Moniz K, Duarte F, Ratti C, Alm EJ, Ling F. Zhang L, et al. Among authors: alm ej. PLoS Comput Biol. 2022 Sep 23;18(9):e1010472. doi: 10.1371/journal.pcbi.1010472. eCollection 2022 Sep. PLoS Comput Biol. 2022. PMID: 36149894 Free PMC article.

2

Adaptive radiation by waves of gene transfer leads to fine-scale resource partitioning in marine microbes.

Hehemann JH, Arevalo P, Datta MS, Yu X, Corzett CH, Henschel A, Preheim SP, Timberlake S, Alm EJ, Polz MF. Hehemann JH, et al. Among authors: alm ej. Nat Commun. 2016 Sep 22;7:12860. doi: 10.1038/ncomms12860. Nat Commun. 2016. PMID: 27653556 Free PMC article.

3

Two dynamic regimes in the human gut microbiome.

Gibbons SM, Kearney SM, Smillie CS, Alm EJ. Gibbons SM, et al. Among authors: alm ej. PLoS Comput Biol. 2017 Feb 21;13(2):e1005364. doi: 10.1371/journal.pcbi.1005364. eCollection 2017 Feb. PLoS Comput Biol. 2017. PMID: 28222117 Free PMC article.

4

Unraveling the processes shaping mammalian gut microbiomes over evolutionary time.

Groussin M, Mazel F, Sanders JG, Smillie CS, Lavergne S, Thuiller W, Alm EJ. Groussin M, et al. Among authors: alm ej. Nat Commun. 2017 Feb 23;8:14319. doi: 10.1038/ncomms14319. Nat Commun. 2017. PMID: 28230052 Free PMC article.

5

dbOTU3: A new implementation of distribution-based OTU calling.

Olesen SW, Duvallet C, Alm EJ. Olesen SW, et al. Among authors: alm ej. PLoS One. 2017 May 4;12(5):e0176335. doi: 10.1371/journal.pone.0176335. eCollection 2017. PLoS One. 2017. PMID: 28472072 Free PMC article.

6

Meta-analysis of gut microbiome studies identifies disease-specific and shared responses.

Duvallet C, Gibbons SM, Gurry T, Irizarry RA, Alm EJ. Duvallet C, et al. Among authors: alm ej. Nat Commun. 2017 Dec 5;8(1):1784. doi: 10.1038/s41467-017-01973-8. Nat Commun. 2017. PMID: 29209090 Free PMC article.

7

Evolution of a Vegetarian Vibrio: Metabolic Specialization of Vibrio breoganii to Macroalgal Substrates.

Corzett CH, Elsherbini J, Chien DM, Hehemann JH, Henschel A, Preheim SP, Yu X, Alm EJ, Polz MF. Corzett CH, et al. Among authors: alm ej. J Bacteriol. 2018 Jul 10;200(15):e00020-18. doi: 10.1128/JB.00020-18. Print 2018 Aug 1. J Bacteriol. 2018. PMID: 29632094 Free PMC article.

8

Correcting for batch effects in case-control microbiome studies.

Gibbons SM, Duvallet C, Alm EJ. Gibbons SM, et al. Among authors: alm ej. PLoS Comput Biol. 2018 Apr 23;14(4):e1006102. doi: 10.1371/journal.pcbi.1006102. eCollection 2018 Apr. PLoS Comput Biol. 2018. PMID: 29684016 Free PMC article.

9

Predictability and persistence of prebiotic dietary supplementation in a healthy human cohort.

Gurry T; HST Microbiome Consortium*; Gibbons SM, Nguyen LTT, Kearney SM, Ananthakrishnan A, Jiang X, Duvallet C, Kassam Z, Alm EJ. Gurry T, et al. Among authors: alm ej. Sci Rep. 2018 Aug 23;8(1):12699. doi: 10.1038/s41598-018-30783-1. Sci Rep. 2018. PMID: 30139999 Free PMC article.

10

Interactions in self-assembled microbial communities saturate with diversity.

Yu X, Polz MF, Alm EJ. Yu X, et al. Among authors: alm ej. ISME J. 2019 Jun;13(6):1602-1617. doi: 10.1038/s41396-019-0356-5. Epub 2019 Feb 26. ISME J. 2019. PMID: 30809013 Free PMC article.

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