MohammadiPeyhani H - Search Results

1

A workflow for annotating the knowledge gaps in metabolic reconstructions using known and hypothetical reactions.

Vayena E, Chiappino-Pepe A, MohammadiPeyhani H, Francioli Y, Hadadi N, Ataman M, Hafner J, Pavlou S, Hatzimanikatis V. Vayena E, et al. Among authors: mohammadipeyhani h. Proc Natl Acad Sci U S A. 2022 Nov 16;119(46):e2211197119. doi: 10.1073/pnas.2211197119. Epub 2022 Nov 7. Proc Natl Acad Sci U S A. 2022. PMID: 36343249 Free PMC article.

2

Computational tools and resources for designing new pathways to small molecules.

Sveshnikova A, MohammadiPeyhani H, Hatzimanikatis V. Sveshnikova A, et al. Among authors: mohammadipeyhani h. Curr Opin Biotechnol. 2022 Aug;76:102722. doi: 10.1016/j.copbio.2022.102722. Epub 2022 Apr 26. Curr Opin Biotechnol. 2022. PMID: 35483185 Free article. Review.

3

ARBRE: Computational resource to predict pathways towards industrially important aromatic compounds.

Sveshnikova A, MohammadiPeyhani H, Hatzimanikatis V. Sveshnikova A, et al. Among authors: mohammadipeyhani h. Metab Eng. 2022 Jul;72:259-274. doi: 10.1016/j.ymben.2022.03.013. Epub 2022 Apr 4. Metab Eng. 2022. PMID: 35381376 Free article.

4

Expanding biochemical knowledge and illuminating metabolic dark matter with ATLASx.

MohammadiPeyhani H, Hafner J, Sveshnikova A, Viterbo V, Hatzimanikatis V. MohammadiPeyhani H, et al. Nat Commun. 2022 Mar 23;13(1):1560. doi: 10.1038/s41467-022-29238-z. Nat Commun. 2022. PMID: 35322036 Free PMC article.

5

NICEdrug.ch, a workflow for rational drug design and systems-level analysis of drug metabolism.

MohammadiPeyhani H, Chiappino-Pepe A, Haddadi K, Hafner J, Hadadi N, Hatzimanikatis V. MohammadiPeyhani H, et al. Elife. 2021 Aug 3;10:e65543. doi: 10.7554/eLife.65543. Elife. 2021. PMID: 34340747 Free PMC article.

6

A computational workflow for the expansion of heterologous biosynthetic pathways to natural product derivatives.

Hafner J, Payne J, MohammadiPeyhani H, Hatzimanikatis V, Smolke C. Hafner J, et al. Among authors: mohammadipeyhani h. Nat Commun. 2021 Mar 19;12(1):1760. doi: 10.1038/s41467-021-22022-5. Nat Commun. 2021. PMID: 33741955 Free PMC article.

7

Updated ATLAS of Biochemistry with New Metabolites and Improved Enzyme Prediction Power.

Hafner J, MohammadiPeyhani H, Sveshnikova A, Scheidegger A, Hatzimanikatis V. Hafner J, et al. Among authors: mohammadipeyhani h. ACS Synth Biol. 2020 Jun 19;9(6):1479-1482. doi: 10.1021/acssynbio.0c00052. Epub 2020 Jun 2. ACS Synth Biol. 2020. PMID: 32421310 Free PMC article.

8

Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites.

Hadadi N, MohammadiPeyhani H, Miskovic L, Seijo M, Hatzimanikatis V. Hadadi N, et al. Among authors: mohammadipeyhani h. Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7298-7307. doi: 10.1073/pnas.1818877116. Epub 2019 Mar 25. Proc Natl Acad Sci U S A. 2019. PMID: 30910961 Free PMC article.

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