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A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings.
Thorpe HA, Booton R, Kallonen T, Gibbon MJ, Couto N, Passet V, López-Fernández S, Rodrigues C, Matthews L, Mitchell S, Reeve R, David S, Merla C, Corbella M, Ferrari C, Comandatore F, Marone P, Brisse S, Sassera D, Corander J, Feil EJ. Thorpe HA, et al. Among authors: david s. Nat Microbiol. 2022 Dec;7(12):2054-2067. doi: 10.1038/s41564-022-01263-0. Epub 2022 Nov 21. Nat Microbiol. 2022. PMID: 36411354 Free PMC article.
A bit of a mouthful.
Hadfield J, David S. Hadfield J, et al. Among authors: david s. Nat Rev Microbiol. 2016 Aug 11;14(9):548. doi: 10.1038/nrmicro.2016.124. Nat Rev Microbiol. 2016. PMID: 27510861
Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread.
David S, Reuter S, Harris SR, Glasner C, Feltwell T, Argimon S, Abudahab K, Goater R, Giani T, Errico G, Aspbury M, Sjunnebo S; EuSCAPE Working Group; ESGEM Study Group; Feil EJ, Rossolini GM, Aanensen DM, Grundmann H. David S, et al. Nat Microbiol. 2019 Nov;4(11):1919-1929. doi: 10.1038/s41564-019-0492-8. Epub 2019 Jul 29. Nat Microbiol. 2019. PMID: 31358985 Free PMC article.
Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae.
David S, Cohen V, Reuter S, Sheppard AE, Giani T, Parkhill J; European Survey of Carbapenemase-Producing Enterobacteriaceae (EuSCAPE) Working Group; ESCMID Study Group for Epidemiological Markers (ESGEM); Rossolini GM, Feil EJ, Grundmann H, Aanensen DM. David S, et al. Proc Natl Acad Sci U S A. 2020 Oct 6;117(40):25043-25054. doi: 10.1073/pnas.2003407117. Epub 2020 Sep 23. Proc Natl Acad Sci U S A. 2020. PMID: 32968015 Free PMC article.
The changing epidemiology of carbapenemase-producing Klebsiella pneumoniae in Italy: toward polyclonal evolution with emergence of high-risk lineages.
Di Pilato V, Errico G, Monaco M, Giani T, Del Grosso M, Antonelli A, David S, Lindh E, Camilli R, Aanensen DM, Rossolini GM, Pantosti A; AR-ISS Laboratory Study Group on carbapenemase-producing Klebsiella pneumoniae. Di Pilato V, et al. Among authors: david s. J Antimicrob Chemother. 2021 Jan 19;76(2):355-361. doi: 10.1093/jac/dkaa431. J Antimicrob Chemother. 2021. PMID: 33188415
A high prevalence of blaOXA-48 in Klebsiella (Raoultella) ornithinolytica and related species in hospital wastewater in South West England.
Gibbon MJ, Couto N, David S, Barden R, Standerwick R, Jagadeesan K, Birkwood H, Dulyayangkul P, Avison MB, Kannan A, Kibbey D, Craft T, Habib S, Thorpe HA, Corander J, Kasprzyk-Hordern B, Feil EJ. Gibbon MJ, et al. Among authors: david s. Microb Genom. 2021 Mar;7(3):mgen000509. doi: 10.1099/mgen.0.000509. Epub 2021 Jan 8. Microb Genom. 2021. PMID: 33416467 Free PMC article.
High-resolution sweep metagenomics using fast probabilistic inference.
Mäklin T, Kallonen T, David S, Boinett CJ, Pascoe B, Méric G, Aanensen DM, Feil EJ, Baker S, Parkhill J, Sheppard SK, Corander J, Honkela A. Mäklin T, et al. Among authors: david s. Wellcome Open Res. 2021 Oct 8;5:14. doi: 10.12688/wellcomeopenres.15639.2. eCollection 2020. Wellcome Open Res. 2021. PMID: 34746439 Free PMC article.
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.
Argimón S, David S, Underwood A, Abrudan M, Wheeler NE, Kekre M, Abudahab K, Yeats CA, Goater R, Taylor B, Harste H, Muddyman D, Feil EJ, Brisse S, Holt K, Donado-Godoy P, Ravikumar KL, Okeke IN, Carlos C, Aanensen DM; NIHR Global Health Research Unit on Genomic Surveillance of Antimicrobial Resistance. Argimón S, et al. Among authors: david s. Clin Infect Dis. 2021 Dec 1;73(Suppl_4):S325-S335. doi: 10.1093/cid/ciab784. Clin Infect Dis. 2021. PMID: 34850838 Free PMC article.
Corrigendum: 'Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae'.
Foster-Nyarko E, Cottingham H, Wick RR, Judd LM, Lam MMC, Wyres KL, Stanton TD, Tsang KK, David S, Aanensen DM, Brisse S, Holt KE. Foster-Nyarko E, et al. Among authors: david s. Microb Genom. 2023 Aug;9(8):mgen001084. doi: 10.1099/mgen.0.001084. Microb Genom. 2023. PMID: 37555745 Free PMC article. No abstract available.
2,186 results