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Page 1
Benchmarking challenging small variants with linked and long reads.
Wagner J, Olson ND, Harris L, Khan Z, Farek J, Mahmoud M, Stankovic A, Kovacevic V, Yoo B, Miller N, Rosenfeld JA, Ni B, Zarate S, Kirsche M, Aganezov S, Schatz MC, Narzisi G, Byrska-Bishop M, Clarke W, Evani US, Markello C, Shafin K, Zhou X, Sidow A, Bansal V, Ebert P, Marschall T, Lansdorp P, Hanlon V, Mattsson CA, Barrio AM, Fiddes IT, Xiao C, Fungtammasan A, Chin CS, Wenger AM, Rowell WJ, Sedlazeck FJ, Carroll A, Salit M, Zook JM. Wagner J, et al. Among authors: harris l. Cell Genom. 2022 May;2(5):100128. doi: 10.1016/j.xgen.2022.100128. Cell Genom. 2022. PMID: 36452119 Free PMC article.
Curated variation benchmarks for challenging medically relevant autosomal genes.
Wagner J, Olson ND, Harris L, McDaniel J, Cheng H, Fungtammasan A, Hwang YC, Gupta R, Wenger AM, Rowell WJ, Khan ZM, Farek J, Zhu Y, Pisupati A, Mahmoud M, Xiao C, Yoo B, Sahraeian SME, Miller DE, Jáspez D, Lorenzo-Salazar JM, Muñoz-Barrera A, Rubio-Rodríguez LA, Flores C, Narzisi G, Evani US, Clarke WE, Lee J, Mason CE, Lincoln SE, Miga KH, Ebbert MTW, Shumate A, Li H, Chin CS, Zook JM, Sedlazeck FJ. Wagner J, et al. Among authors: harris l. Nat Biotechnol. 2022 May;40(5):672-680. doi: 10.1038/s41587-021-01158-1. Epub 2022 Feb 7. Nat Biotechnol. 2022. PMID: 35132260 Free PMC article.
Immune digital twins for complex human pathologies: applications, limitations, and challenges.
Niarakis A, Laubenbacher R, An G, Ilan Y, Fisher J, Flobak Å, Reiche K, Rodríguez Martínez M, Geris L, Ladeira L, Veschini L, Blinov ML, Messina F, Fonseca LL, Ferreira S, Montagud A, Noël V, Marku M, Tsirvouli E, Torres MM, Harris LA, Sego TJ, Cockrell C, Shick AE, Balci H, Salazar A, Rian K, Hemedan AA, Esteban-Medina M, Staumont B, Hernandez-Vargas E, Martis B S, Madrid-Valiente A, Karampelesis P, Sordo Vieira L, Harlapur P, Kulesza A, Nikaein N, Garira W, Malik Sheriff RS, Thakar J, Tran VDT, Carbonell-Caballero J, Safaei S, Valencia A, Zinovyev A, Glazier JA. Niarakis A, et al. Among authors: harris la. NPJ Syst Biol Appl. 2024 Nov 30;10(1):141. doi: 10.1038/s41540-024-00450-5. NPJ Syst Biol Appl. 2024. PMID: 39616158 Review.
History and genetic diversity of African sheep: Contrasting phenotypic and genomic diversity.
Da Silva A, Ahbara A, Baazaoui I, Jemaa SB, Cao Y, Ciani E, Dzomba EF, Evans L, Gootwine E, Hanotte O, Harris L, Li MH, Mastrangelo S, Missohou A, Molotsi A, Muchadeyi FC, Mwacharo JM, Tallet G, Vernus P, Hall SJG, Lenstra JA. Da Silva A, et al. Among authors: harris l. Anim Genet. 2024 Nov 19. doi: 10.1111/age.13488. Online ahead of print. Anim Genet. 2024. PMID: 39561986 Review.
Development of SNP Panels from Low-Coverage Whole Genome Sequencing (lcWGS) to Support Indigenous Fisheries for Three Salmonid Species in Northern Canada.
Beemelmanns A, Bouchard R, Michaelides S, Normandeau E, Jeon HB, Chamlian B, Babin C, Hénault P, Perrot O, Harris LN, Zhu X, Fraser D, Bernatchez L, Moore JS. Beemelmanns A, et al. Among authors: harris ln. Mol Ecol Resour. 2024 Nov 18:e14040. doi: 10.1111/1755-0998.14040. Online ahead of print. Mol Ecol Resour. 2024. PMID: 39552382
The NHGRI-EBI GWAS Catalog: standards for reusability, sustainability and diversity.
Cerezo M, Sollis E, Ji Y, Lewis E, Abid A, Bircan KO, Hall P, Hayhurst J, John S, Mosaku A, Ramachandran S, Foreman A, Ibrahim A, McLaughlin J, Pendlington Z, Stefancsik R, Lambert SA, McMahon A, Morales J, Keane T, Inouye M, Parkinson H, Harris LW. Cerezo M, et al. Among authors: harris lw. Nucleic Acids Res. 2024 Nov 12:gkae1070. doi: 10.1093/nar/gkae1070. Online ahead of print. Nucleic Acids Res. 2024. PMID: 39530240
3,589 results