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Guiding the choice of informatics software and tools for lipidomics research applications.
Ni Z, Wölk M, Jukes G, Mendivelso Espinosa K, Ahrends R, Aimo L, Alvarez-Jarreta J, Andrews S, Andrews R, Bridge A, Clair GC, Conroy MJ, Fahy E, Gaud C, Goracci L, Hartler J, Hoffmann N, Kopczyinki D, Korf A, Lopez-Clavijo AF, Malik A, Ackerman JM, Molenaar MR, O'Donovan C, Pluskal T, Shevchenko A, Slenter D, Siuzdak G, Kutmon M, Tsugawa H, Willighagen EL, Xia J, O'Donnell VB, Fedorova M. Ni Z, et al. Among authors: kutmon m. Nat Methods. 2023 Feb;20(2):193-204. doi: 10.1038/s41592-022-01710-0. Epub 2022 Dec 21. Nat Methods. 2023. PMID: 36543939 Free PMC article. Review.
WikiPathways: capturing the full diversity of pathway knowledge.
Kutmon M, Riutta A, Nunes N, Hanspers K, Willighagen EL, Bohler A, Mélius J, Waagmeester A, Sinha SR, Miller R, Coort SL, Cirillo E, Smeets B, Evelo CT, Pico AR. Kutmon M, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D488-94. doi: 10.1093/nar/gkv1024. Epub 2015 Oct 19. Nucleic Acids Res. 2016. PMID: 26481357 Free PMC article.
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research.
Slenter DN, Kutmon M, Hanspers K, Riutta A, Windsor J, Nunes N, Mélius J, Cirillo E, Coort SL, Digles D, Ehrhart F, Giesbertz P, Kalafati M, Martens M, Miller R, Nishida K, Rieswijk L, Waagmeester A, Eijssen LMT, Evelo CT, Pico AR, Willighagen EL. Slenter DN, et al. Among authors: kutmon m. Nucleic Acids Res. 2018 Jan 4;46(D1):D661-D667. doi: 10.1093/nar/gkx1064. Nucleic Acids Res. 2018. PMID: 29136241 Free PMC article.
WikiPathways: connecting communities.
Martens M, Ammar A, Riutta A, Waagmeester A, Slenter DN, Hanspers K, A Miller R, Digles D, Lopes EN, Ehrhart F, Dupuis LJ, Winckers LA, Coort SL, Willighagen EL, Evelo CT, Pico AR, Kutmon M. Martens M, et al. Among authors: kutmon m. Nucleic Acids Res. 2021 Jan 8;49(D1):D613-D621. doi: 10.1093/nar/gkaa1024. Nucleic Acids Res. 2021. PMID: 33211851 Free PMC article.
60 results