Baker D - Search Results

1

Time-tagged ticker tapes for intracellular recordings.

Lin D, Li X, Moult E, Park P, Tang B, Shen H, Grimm JB, Falco N, Jia BZ, Baker D, Lavis LD, Cohen AE. Lin D, et al. Among authors: baker d. Nat Biotechnol. 2023 May;41(5):631-639. doi: 10.1038/s41587-022-01524-7. Epub 2023 Jan 2. Nat Biotechnol. 2023. PMID: 36593408 Free PMC article.

2

Multi-input chemical control of protein dimerization for programming graded cellular responses.

Foight GW, Wang Z, Wei CT, Jr Greisen P, Warner KM, Cunningham-Bryant D, Park K, Brunette TJ, Sheffler W, Baker D, Maly DJ. Foight GW, et al. Among authors: baker d. Nat Biotechnol. 2019 Oct;37(10):1209-1216. doi: 10.1038/s41587-019-0242-8. Epub 2019 Sep 9. Nat Biotechnol. 2019. PMID: 31501561 Free PMC article.

3

Alignment of Au nanorods along de novo designed protein nanofibers studied with automated image analysis.

Yaman MY, Guye KN, Ziatdinov M, Shen H, Baker D, Kalinin SV, Ginger DS. Yaman MY, et al. Among authors: baker d. Soft Matter. 2021 Jun 30;17(25):6109-6115. doi: 10.1039/d1sm00645b. Soft Matter. 2021. PMID: 34128040

4

Computationally designed sensors detect endogenous Ras activity and signaling effectors at subcellular resolution.

Zhang JZ, Nguyen WH, Greenwood N, Rose JC, Ong SE, Maly DJ, Baker D. Zhang JZ, et al. Among authors: baker d. Nat Biotechnol. 2024 Jan 25. doi: 10.1038/s41587-023-02107-w. Online ahead of print. Nat Biotechnol. 2024. PMID: 38273065

5

De novo design of pH-responsive self-assembling helical protein filaments.

Shen H, Lynch EM, Akkineni S, Watson JL, Decarreau J, Bethel NP, Benna I, Sheffler W, Farrell D, DiMaio F, Derivery E, De Yoreo JJ, Kollman J, Baker D. Shen H, et al. Among authors: baker d. Nat Nanotechnol. 2024 Jul;19(7):1016-1021. doi: 10.1038/s41565-024-01641-1. Epub 2024 Apr 3. Nat Nanotechnol. 2024. PMID: 38570702 Free PMC article.

6

Publisher Correction: Multistate and functional protein design using RoseTTAFold sequence space diffusion.

Lisanza SL, Gershon JM, Tipps SWK, Sims JN, Arnoldt L, Hendel SJ, Simma MK, Liu G, Yase M, Wu H, Tharp CD, Li X, Kang A, Brackenbrough E, Bera AK, Gerben S, Wittmann BJ, McShan AC, Baker D. Lisanza SL, et al. Among authors: baker d. Nat Biotechnol. 2024 Oct 7. doi: 10.1038/s41587-024-02456-0. Online ahead of print. Nat Biotechnol. 2024. PMID: 39375454 No abstract available.

7

A surprising simplicity to protein folding.

Baker D. Baker D. Nature. 2000 May 4;405(6782):39-42. doi: 10.1038/35011000. Nature. 2000. PMID: 10811210

8

Computational redesign of endonuclease DNA binding and cleavage specificity.

Ashworth J, Havranek JJ, Duarte CM, Sussman D, Monnat RJ Jr, Stoddard BL, Baker D. Ashworth J, et al. Among authors: baker d. Nature. 2006 Jun 1;441(7093):656-9. doi: 10.1038/nature04818. Nature. 2006. PMID: 16738662 Free PMC article.

9

High-resolution structure prediction and the crystallographic phase problem.

Qian B, Raman S, Das R, Bradley P, McCoy AJ, Read RJ, Baker D. Qian B, et al. Among authors: baker d. Nature. 2007 Nov 8;450(7167):259-64. doi: 10.1038/nature06249. Epub 2007 Oct 14. Nature. 2007. PMID: 17934447 Free PMC article.

10

Kemp elimination catalysts by computational enzyme design.

Röthlisberger D, Khersonsky O, Wollacott AM, Jiang L, DeChancie J, Betker J, Gallaher JL, Althoff EA, Zanghellini A, Dym O, Albeck S, Houk KN, Tawfik DS, Baker D. Röthlisberger D, et al. Among authors: baker d. Nature. 2008 May 8;453(7192):190-5. doi: 10.1038/nature06879. Epub 2008 Mar 19. Nature. 2008. PMID: 18354394

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