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Identification of kidney cell types in scRNA-seq and snRNA-seq data using machine learning algorithms.
Tisch A, Madapoosi S, Blough S, Rosa J, Eddy S, Mariani L, Naik A, Limonte C, McCown P, Menon R, Rosas SE, Parikh CR, Kretzler M, Mahfouz A, Alakwaa F; Kidney Precision Medicine Project (KPMP). Tisch A, et al. Among authors: mahfouz a. Heliyon. 2024 Sep 27;10(19):e38567. doi: 10.1016/j.heliyon.2024.e38567. eCollection 2024 Oct 15. Heliyon. 2024. PMID: 39403515 Free PMC article.
Combined plasma protein and memory T cell profiling discern IBD-patient-immunotypes related to intestinal disease and treatment outcomes.
Heredia M, Charrout M, Klomberg RCW, Aardoom MA, Jongsma MME, Kemos P, Hulleman-van Haaften DH, Tuk B, van Berkel LA, Bley Folly B, Calado B, Nugteren S, Simons-Oosterhuis Y, Doukas M, Sanders MA, van Beek G, Ruemmele FM, Croft NM, Mahfouz A, Reinders MJT, Escher JC, de Ridder L, Samsom JN. Heredia M, et al. Among authors: mahfouz a. Mucosal Immunol. 2024 Sep 26:S1933-0219(24)00097-7. doi: 10.1016/j.mucimm.2024.09.004. Online ahead of print. Mucosal Immunol. 2024. PMID: 39332767 Free article.
SIRV: spatial inference of RNA velocity at the single-cell resolution.
Abdelaal T, Grossouw LM, Pasterkamp RJ, Lelieveldt BPF, Reinders MJT, Mahfouz A. Abdelaal T, et al. Among authors: mahfouz a. NAR Genom Bioinform. 2024 Aug 6;6(3):lqae100. doi: 10.1093/nargab/lqae100. eCollection 2024 Sep. NAR Genom Bioinform. 2024. PMID: 39108639 Free PMC article.
331 results