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From pairwise to multiple spliced alignment.
Jammali S, Djossou A, Ouédraogo WDD, Nevers Y, Chegrane I, Ouangraoua A. Jammali S, et al. Among authors: nevers y. Bioinform Adv. 2022 Jan 5;2(1):vbab044. doi: 10.1093/bioadv/vbab044. eCollection 2022. Bioinform Adv. 2022. PMID: 36699392 Free PMC article.
The Quest for Orthologs orthology benchmark service in 2022.
Nevers Y, Jones TEM, Jyothi D, Yates B, Ferret M, Portell-Silva L, Codo L, Cosentino S, Marcet-Houben M, Vlasova A, Poidevin L, Kress A, Hickman M, Persson E, Piližota I, Guijarro-Clarke C; OpenEBench team the Quest for Orthologs Consortium; Iwasaki W, Lecompte O, Sonnhammer E, Roos DS, Gabaldón T, Thybert D, Thomas PD, Hu Y, Emms DM, Bruford E, Capella-Gutierrez S, Martin MJ, Dessimoz C, Altenhoff A. Nevers Y, et al. Nucleic Acids Res. 2022 Jul 5;50(W1):W623-W632. doi: 10.1093/nar/gkac330. Nucleic Acids Res. 2022. PMID: 35552456 Free PMC article.
Ten Years of Collaborative Progress in the Quest for Orthologs.
Linard B, Ebersberger I, McGlynn SE, Glover N, Mochizuki T, Patricio M, Lecompte O, Nevers Y, Thomas PD, Gabaldón T, Sonnhammer E, Dessimoz C, Uchiyama I; QFO Consortium. Linard B, et al. Among authors: nevers y. Mol Biol Evol. 2021 Jul 29;38(8):3033-3045. doi: 10.1093/molbev/msab098. Mol Biol Evol. 2021. PMID: 33822172 Free PMC article.
How to build phylogenetic species trees with OMA.
Dylus D, Nevers Y, Altenhoff AM, Gürtler A, Dessimoz C, Glover NM. Dylus D, et al. Among authors: nevers y. F1000Res. 2020 Jun 4;9:511. doi: 10.12688/f1000research.23790.2. eCollection 2020. F1000Res. 2020. PMID: 35722083 Free PMC article.
OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem.
Altenhoff AM, Warwick Vesztrocy A, Bernard C, Train CM, Nicheperovich A, Prieto Baños S, Julca I, Moi D, Nevers Y, Majidian S, Dessimoz C, Glover NM. Altenhoff AM, et al. Among authors: nevers y. Nucleic Acids Res. 2024 Jan 5;52(D1):D513-D521. doi: 10.1093/nar/gkad1020. Nucleic Acids Res. 2024. PMID: 37962356 Free PMC article.
OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order and more.
Altenhoff AM, Train CM, Gilbert KJ, Mediratta I, Mendes de Farias T, Moi D, Nevers Y, Radoykova HS, Rossier V, Warwick Vesztrocy A, Glover NM, Dessimoz C. Altenhoff AM, et al. Among authors: nevers y. Nucleic Acids Res. 2021 Jan 8;49(D1):D373-D379. doi: 10.1093/nar/gkaa1007. Nucleic Acids Res. 2021. PMID: 33174605 Free PMC article.
17 results