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Evaluation of the portability of computable phenotypes with natural language processing in the eMERGE network.
Pacheco JA, Rasmussen LV, Wiley K Jr, Person TN, Cronkite DJ, Sohn S, Murphy S, Gundelach JH, Gainer V, Castro VM, Liu C, Mentch F, Lingren T, Sundaresan AS, Eickelberg G, Willis V, Furmanchuk A, Patel R, Carrell DS, Deng Y, Walton N, Satterfield BA, Kullo IJ, Dikilitas O, Smith JC, Peterson JF, Shang N, Kiryluk K, Ni Y, Li Y, Nadkarni GN, Rosenthal EA, Walunas TL, Williams MS, Karlson EW, Linder JE, Luo Y, Weng C, Wei W. Pacheco JA, et al. Among authors: smith jc. Sci Rep. 2023 Feb 3;13(1):1971. doi: 10.1038/s41598-023-27481-y. Sci Rep. 2023. PMID: 36737471 Free PMC article.
Neptune: an environment for the delivery of genomic medicine.
Eric V, Yi V, Murdock D, Kalla SE, Wu TJ, Sabo A, Li S, Meng Q, Tian X, Murugan M, Cohen M, Kovar C, Wei WQ, Chung WK, Weng C, Wiesner GL, Jarvik GP, Muzny D, Gibbs RA; eMERGE Consortium. Eric V, et al. Genet Med. 2021 Oct;23(10):1838-1846. doi: 10.1038/s41436-021-01230-w. Epub 2021 Jul 13. Genet Med. 2021. PMID: 34257418 Free PMC article.
Data-driven automated classification algorithms for acute health conditions: applying PheNorm to COVID-19 disease.
Smith JC, Williamson BD, Cronkite DJ, Park D, Whitaker JM, McLemore MF, Osmanski JT, Winter R, Ramaprasan A, Kelley A, Shea M, Wittayanukorn S, Stojanovic D, Zhao Y, Toh S, Johnson KB, Aronoff DM, Carrell DS. Smith JC, et al. J Am Med Inform Assoc. 2024 Feb 16;31(3):574-582. doi: 10.1093/jamia/ocad241. J Am Med Inform Assoc. 2024. PMID: 38109888
Natural language processing to identify lupus nephritis phenotype in electronic health records.
Deng Y, Pacheco JA, Ghosh A, Chung A, Mao C, Smith JC, Zhao J, Wei WQ, Barnado A, Dorn C, Weng C, Liu C, Cordon A, Yu J, Tedla Y, Kho A, Ramsey-Goldman R, Walunas T, Luo Y. Deng Y, et al. Among authors: smith jc. BMC Med Inform Decis Mak. 2024 Mar 3;22(Suppl 2):348. doi: 10.1186/s12911-024-02420-7. BMC Med Inform Decis Mak. 2024. PMID: 38433189 Free PMC article.
Enhancing Postmarketing Surveillance of Medical Products With Large Language Models.
Matheny ME, Yang J, Smith JC, Walsh CG, Al-Garadi MA, Davis SE, Marsolo KA, Fabbri D, Reeves RR, Johnson KB, Dal Pan GJ, Ball R, Desai RJ. Matheny ME, et al. Among authors: smith jc. JAMA Netw Open. 2024 Aug 1;7(8):e2428276. doi: 10.1001/jamanetworkopen.2024.28276. JAMA Netw Open. 2024. PMID: 39150707 Free article.
The FDA Sentinel Real World Evidence Data Enterprise (RWE-DE).
Desai RJ, Marsolo K, Smith J, Carrell D, Penfold R, Pillai HS, Lii J, Ngan K, Winter R, Adgent M, Ramaprasan A, Driscoll MR, Scarnecchia D, Kiernan D, Draper C, Lyons JG, Khurshid A, Maro JC, Zimmerman R, Brown J, Bright P, Hernández-Muñoz JJ, Matheny ME, Schneeweiss S. Desai RJ, et al. Among authors: smith j. Pharmacoepidemiol Drug Saf. 2024 Oct;33(10):e70028. doi: 10.1002/pds.70028. Pharmacoepidemiol Drug Saf. 2024. PMID: 39385712
ConceptWAS: a high-throughput method for early identification of COVID-19 presenting symptoms.
Zhao J, Grabowska ME, Kerchberger VE, Smith JC, Eken HN, Feng Q, Peterson JF, Rosenbloom ST, Johnson KB, Wei WQ. Zhao J, et al. Among authors: smith jc. medRxiv [Preprint]. 2020 Nov 10:2020.11.06.20227165. doi: 10.1101/2020.11.06.20227165. medRxiv. 2020. Update in: J Biomed Inform. 2021 May;117:103748. doi: 10.1016/j.jbi.2021.103748 PMID: 33200151 Free PMC article. Updated. Preprint.
2,009 results