Carrasco Pro S - Search Results

1

Widespread perturbation of ETS factor binding sites in cancer.

Carrasco Pro S, Hook H, Bray D, Berenzy D, Moyer D, Yin M, Labadorf AT, Tewhey R, Siggers T, Fuxman Bass JI. Carrasco Pro S, et al. Nat Commun. 2023 Feb 17;14(1):913. doi: 10.1038/s41467-023-36535-8. Nat Commun. 2023. PMID: 36808133 Free PMC article.

2

Publisher Correction: Prediction of genome-wide effects of single nucleotide variants on transcription factor binding.

Carrasco Pro S, Bulekova K, Gregor B, Labadorf A, Fuxman Bass JI. Carrasco Pro S, et al. Sci Rep. 2021 Feb 3;11(1):3395. doi: 10.1038/s41598-021-83094-3. Sci Rep. 2021. PMID: 33536541 Free PMC article. No abstract available.

3

Prediction of genome-wide effects of single nucleotide variants on transcription factor binding.

Carrasco Pro S, Bulekova K, Gregor B, Labadorf A, Fuxman Bass JI. Carrasco Pro S, et al. Sci Rep. 2020 Oct 19;10(1):17632. doi: 10.1038/s41598-020-74793-4. Sci Rep. 2020. PMID: 33077858 Free PMC article.

4

Discovering human transcription factor physical interactions with genetic variants, novel DNA motifs, and repetitive elements using enhanced yeast one-hybrid assays.

Shrestha S, Sewell JA, Santoso CS, Forchielli E, Carrasco Pro S, Martinez M, Fuxman Bass JI. Shrestha S, et al. Among authors: carrasco pro s. Genome Res. 2019 Sep;29(9):1533-1544. doi: 10.1101/gr.248823.119. Genome Res. 2019. PMID: 31481462 Free PMC article.

5

Global landscape of mouse and human cytokine transcriptional regulation.

Carrasco Pro S, Dafonte Imedio A, Santoso CS, Gan KA, Sewell JA, Martinez M, Sereda R, Mehta S, Fuxman Bass JI. Carrasco Pro S, et al. Nucleic Acids Res. 2018 Oct 12;46(18):9321-9337. doi: 10.1093/nar/gky787. Nucleic Acids Res. 2018. PMID: 30184180 Free PMC article.

6

Microbiota epitope similarity either dampens or enhances the immunogenicity of disease-associated antigenic epitopes.

Carrasco Pro S, Lindestam Arlehamn CS, Dhanda SK, Carpenter C, Lindvall M, Faruqi AA, Santee CA, Renz H, Sidney J, Peters B, Sette A. Carrasco Pro S, et al. PLoS One. 2018 May 7;13(5):e0196551. doi: 10.1371/journal.pone.0196551. eCollection 2018. PLoS One. 2018. PMID: 29734356 Free PMC article.

7

Identification of Single Nucleotide Non-coding Driver Mutations in Cancer.

Gan KA, Carrasco Pro S, Sewell JA, Fuxman Bass JI. Gan KA, et al. Among authors: carrasco pro s. Front Genet. 2018 Feb 2;9:16. doi: 10.3389/fgene.2018.00016. eCollection 2018. Front Genet. 2018. PMID: 29456552 Free PMC article. Review.

8

Automatic Generation of Validated Specific Epitope Sets.

Carrasco Pro S, Sidney J, Paul S, Lindestam Arlehamn C, Weiskopf D, Peters B, Sette A. Carrasco Pro S, et al. J Immunol Res. 2015;2015:763461. doi: 10.1155/2015/763461. Epub 2015 Oct 19. J Immunol Res. 2015. PMID: 26568965 Free PMC article.

9

Development and validation of a broad scheme for prediction of HLA class II restricted T cell epitopes.

Paul S, Lindestam Arlehamn CS, Scriba TJ, Dillon MB, Oseroff C, Hinz D, McKinney DM, Carrasco Pro S, Sidney J, Peters B, Sette A. Paul S, et al. Among authors: carrasco pro s. J Immunol Methods. 2015 Jul;422:28-34. doi: 10.1016/j.jim.2015.03.022. Epub 2015 Apr 7. J Immunol Methods. 2015. PMID: 25862607 Free PMC article.

10

Improved pan-specific MHC class I peptide-binding predictions using a novel representation of the MHC-binding cleft environment.

Carrasco Pro S, Zimic M, Nielsen M. Carrasco Pro S, et al. Tissue Antigens. 2014 Feb;83(2):94-100. doi: 10.1111/tan.12292. Tissue Antigens. 2014. PMID: 24447175 Free PMC article.

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