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The Gene Ontology knowledgebase in 2023.
Gene Ontology Consortium; Aleksander SA, Balhoff J, Carbon S, Cherry JM, Drabkin HJ, Ebert D, Feuermann M, Gaudet P, Harris NL, Hill DP, Lee R, Mi H, Moxon S, Mungall CJ, Muruganugan A, Mushayahama T, Sternberg PW, Thomas PD, Van Auken K, Ramsey J, Siegele DA, Chisholm RL, Fey P, Aspromonte MC, Nugnes MV, Quaglia F, Tosatto S, Giglio M, Nadendla S, Antonazzo G, Attrill H, Dos Santos G, Marygold S, Strelets V, Tabone CJ, Thurmond J, Zhou P, Ahmed SH, Asanitthong P, Luna Buitrago D, Erdol MN, Gage MC, Ali Kadhum M, Li KYC, Long M, Michalak A, Pesala A, Pritazahra A, Saverimuttu SCC, Su R, Thurlow KE, Lovering RC, Logie C, Oliferenko S, Blake J, Christie K, Corbani L, Dolan ME, Drabkin HJ, Hill DP, Ni L, Sitnikov D, Smith C, Cuzick A, Seager J, Cooper L, Elser J, Jaiswal P, Gupta P, Jaiswal P, Naithani S, Lera-Ramirez M, Rutherford K, Wood V, De Pons JL, Dwinell MR, Hayman GT, Kaldunski ML, Kwitek AE, Laulederkind SJF, Tutaj MA, Vedi M, Wang SJ, D'Eustachio P, Aimo L, Axelsen K, Bridge A, Hyka-Nouspikel N, Morgat A, Aleksander SA, Cherry JM, Engel SR, Karra K, Miyasato SR, Nash RS, Skrzypek MS, Weng S, Wong ED, Bakker E, Berardini TZ, Reiser L, Auchincloss A, Axelsen K, Argoud-Puy G,… See abstract for full author list ➔ Gene Ontology Consortium, et al. Among authors: ramachandran s. Genetics. 2023 May 4;224(1):iyad031. doi: 10.1093/genetics/iyad031. Genetics. 2023. PMID: 36866529 Free PMC article. Review.
The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources.
Ruzicka L, Howe DG, Ramachandran S, Toro S, Van Slyke CE, Bradford YM, Eagle A, Fashena D, Frazer K, Kalita P, Mani P, Martin R, Moxon ST, Paddock H, Pich C, Schaper K, Shao X, Singer A, Westerfield M. Ruzicka L, et al. Among authors: ramachandran s. Nucleic Acids Res. 2019 Jan 8;47(D1):D867-D873. doi: 10.1093/nar/gky1090. Nucleic Acids Res. 2019. PMID: 30407545 Free PMC article.
Zebrafish information network, the knowledgebase for Danio rerio research.
Bradford YM, Van Slyke CE, Ruzicka L, Singer A, Eagle A, Fashena D, Howe DG, Frazer K, Martin R, Paddock H, Pich C, Ramachandran S, Westerfield M. Bradford YM, et al. Among authors: ramachandran s. Genetics. 2022 Apr 4;220(4):iyac016. doi: 10.1093/genetics/iyac016. Genetics. 2022. PMID: 35166825 Free PMC article.
From multiallele fish to nonstandard environments, how ZFIN assigns phenotypes, human disease models, and gene expression annotations to genes.
Bradford YM, Van Slyke CE, Howe DG, Fashena D, Frazer K, Martin R, Paddock H, Pich C, Ramachandran S, Ruzicka L, Singer A, Taylor R, Tseng WC, Westerfield M. Bradford YM, et al. Among authors: ramachandran s. Genetics. 2023 May 4;224(1):iyad032. doi: 10.1093/genetics/iyad032. Genetics. 2023. PMID: 36864549 Free PMC article.
Data extraction, transformation, and dissemination through ZFIN.
Howe DG, Frazer K, Fashena D, Ruzicka L, Bradford Y, Ramachandran S, Ruef BJ, Van Slyke C, Singer A, Westerfield M. Howe DG, et al. Among authors: ramachandran s. Methods Cell Biol. 2011;104:311-25. doi: 10.1016/B978-0-12-374814-0.00017-3. Methods Cell Biol. 2011. PMID: 21924170 Free PMC article.
The Zebrafish Model Organism Database: new support for human disease models, mutation details, gene expression phenotypes and searching.
Howe DG, Bradford YM, Eagle A, Fashena D, Frazer K, Kalita P, Mani P, Martin R, Moxon ST, Paddock H, Pich C, Ramachandran S, Ruzicka L, Schaper K, Shao X, Singer A, Toro S, Van Slyke C, Westerfield M. Howe DG, et al. Among authors: ramachandran s. Nucleic Acids Res. 2017 Jan 4;45(D1):D758-D768. doi: 10.1093/nar/gkw1116. Epub 2016 Nov 28. Nucleic Acids Res. 2017. PMID: 27899582 Free PMC article.
Zebrafish Models of Human Disease: Gaining Insight into Human Disease at ZFIN.
Bradford YM, Toro S, Ramachandran S, Ruzicka L, Howe DG, Eagle A, Kalita P, Martin R, Taylor Moxon SA, Schaper K, Westerfield M. Bradford YM, et al. Among authors: ramachandran s. ILAR J. 2017 Jul 1;58(1):4-16. doi: 10.1093/ilar/ilw040. ILAR J. 2017. PMID: 28838067 Free PMC article.
1,752 results