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Model Integration in Computational Biology: The Role of Reproducibility, Credibility and Utility.
Karr J, Malik-Sheriff RS, Osborne J, Gonzalez-Parra G, Forgoston E, Bowness R, Liu Y, Thompson R, Garira W, Barhak J, Rice J, Torres M, Dobrovolny HM, Tang T, Waites W, Glazier JA, Faeder JR, Kulesza A. Karr J, et al. Among authors: glazier ja. Front Syst Biol. 2022;2:822606. doi: 10.3389/fsysb.2022.822606. Epub 2022 Mar 7. Front Syst Biol. 2022. PMID: 36909847 Free PMC article.
Forum on immune digital twins: a meeting report.
Laubenbacher R, Adler F, An G, Castiglione F, Eubank S, Fonseca LL, Glazier J, Helikar T, Jett-Tilton M, Kirschner D, Macklin P, Mehrad B, Moore B, Pasour V, Shmulevich I, Smith A, Voigt I, Yankeelov TE, Ziemssen T. Laubenbacher R, et al. NPJ Syst Biol Appl. 2024 Feb 16;10(1):19. doi: 10.1038/s41540-024-00345-5. NPJ Syst Biol Appl. 2024. PMID: 38365857 Free PMC article. Review.
Toward mechanistic medical digital twins: some use cases in immunology.
Laubenbacher R, Adler F, An G, Castiglione F, Eubank S, Fonseca LL, Glazier J, Helikar T, Jett-Tilton M, Kirschner D, Macklin P, Mehrad B, Moore B, Pasour V, Shmulevich I, Smith A, Voigt I, Yankeelov TE, Ziemssen T. Laubenbacher R, et al. Front Digit Health. 2024 Mar 7;6:1349595. doi: 10.3389/fdgth.2024.1349595. eCollection 2024. Front Digit Health. 2024. PMID: 38515550 Free PMC article. Review.
Immune digital twins for complex human pathologies: applications, limitations, and challenges.
Niarakis A, Laubenbacher R, An G, Ilan Y, Fisher J, Flobak Å, Reiche K, Rodríguez Martínez M, Geris L, Ladeira L, Veschini L, Blinov ML, Messina F, Fonseca LL, Ferreira S, Montagud A, Noël V, Marku M, Tsirvouli E, Torres MM, Harris LA, Sego TJ, Cockrell C, Shick AE, Balci H, Salazar A, Rian K, Hemedan AA, Esteban-Medina M, Staumont B, Hernandez-Vargas E, Martis B S, Madrid-Valiente A, Karampelesis P, Sordo Vieira L, Harlapur P, Kulesza A, Nikaein N, Garira W, Malik Sheriff RS, Thakar J, Tran VDT, Carbonell-Caballero J, Safaei S, Valencia A, Zinovyev A, Glazier JA. Niarakis A, et al. Among authors: glazier ja. NPJ Syst Biol Appl. 2024 Nov 30;10(1):141. doi: 10.1038/s41540-024-00450-5. NPJ Syst Biol Appl. 2024. PMID: 39616158 Free PMC article. Review.
Modeling the roles of cohesotaxis, cell-intercalation, and tissue geometry in collective cell migration of Xenopus mesendoderm.
Comlekoglu T, Dzamba BJ, Pacheco GG, Shook DR, Sego TJ, Glazier JA, Peirce SM, DeSimone DW. Comlekoglu T, et al. Among authors: glazier ja. bioRxiv [Preprint]. 2023 Oct 17:2023.10.16.562601. doi: 10.1101/2023.10.16.562601. bioRxiv. 2023. Update in: Biol Open. 2024 Aug 15;13(8):bio060615. doi: 10.1242/bio.060615 PMID: 37904937 Free PMC article. Updated. Preprint.
117 results