Ouyang JF - Search Results

1

Single cell analysis in head and neck cancer reveals potential immune evasion mechanisms during early metastasis.

Quah HS, Cao EY, Suteja L, Li CH, Leong HS, Chong FT, Gupta S, Arcinas C, Ouyang JF, Ang V, Celhar T, Zhao Y, Tay HC, Chan J, Takahashi T, Tan DSW, Biswas SK, Rackham OJL, Iyer NG. Quah HS, et al. Among authors: ouyang jf. Nat Commun. 2023 Mar 27;14(1):1680. doi: 10.1038/s41467-023-37379-y. Nat Commun. 2023. PMID: 36973261 Free PMC article.

2

Molecular Interaction Networks to Select Factors for Cell Conversion.

Ouyang JF, Kamaraj US, Polo JM, Gough J, Rackham OJL. Ouyang JF, et al. Methods Mol Biol. 2019;1975:333-361. doi: 10.1007/978-1-4939-9224-9_16. Methods Mol Biol. 2019. PMID: 31062318

3

Correction to: Molecular Interaction Networks to Select Factors for Cell Conversion.

Ouyang JF, Kamaraj US, Polo JM, Gough J, Rackham OJL. Ouyang JF, et al. Methods Mol Biol. 2019;1975:C1. doi: 10.1007/978-1-4939-9224-9_20. Methods Mol Biol. 2019. PMID: 31290135

4

deltaTE: Detection of Translationally Regulated Genes by Integrative Analysis of Ribo-seq and RNA-seq Data.

Chothani S, Adami E, Ouyang JF, Viswanathan S, Hubner N, Cook SA, Schafer S, Rackham OJL. Chothani S, et al. Among authors: ouyang jf. Curr Protoc Mol Biol. 2019 Dec;129(1):e108. doi: 10.1002/cpmb.108. Curr Protoc Mol Biol. 2019. PMID: 31763789 Free PMC article.

5

A single-cell atlas of entorhinal cortex from individuals with Alzheimer's disease reveals cell-type-specific gene expression regulation.

Grubman A, Chew G, Ouyang JF, Sun G, Choo XY, McLean C, Simmons RK, Buckberry S, Vargas-Landin DB, Poppe D, Pflueger J, Lister R, Rackham OJL, Petretto E, Polo JM. Grubman A, et al. Among authors: ouyang jf. Nat Neurosci. 2019 Dec;22(12):2087-2097. doi: 10.1038/s41593-019-0539-4. Nat Neurosci. 2019. PMID: 31768052

6

GeneSwitches: ordering gene expression and functional events in single-cell experiments.

Cao EY, Ouyang JF, Rackham OJL. Cao EY, et al. Among authors: ouyang jf. Bioinformatics. 2020 May 1;36(10):3273-3275. doi: 10.1093/bioinformatics/btaa099. Bioinformatics. 2020. PMID: 32058565

7

Reprogramming roadmap reveals route to human induced trophoblast stem cells.

Liu X, Ouyang JF, Rossello FJ, Tan JP, Davidson KC, Valdes DS, Schröder J, Sun YBY, Chen J, Knaupp AS, Sun G, Chy HS, Huang Z, Pflueger J, Firas J, Tano V, Buckberry S, Paynter JM, Larcombe MR, Poppe D, Choo XY, O'Brien CM, Pastor WA, Chen D, Leichter AL, Naeem H, Tripathi P, Das PP, Grubman A, Powell DR, Laslett AL, David L, Nilsson SK, Clark AT, Lister R, Nefzger CM, Martelotto LG, Rackham OJL, Polo JM. Liu X, et al. Among authors: ouyang jf. Nature. 2020 Oct;586(7827):101-107. doi: 10.1038/s41586-020-2734-6. Epub 2020 Sep 16. Nature. 2020. PMID: 32939092

8

EpiMogrify Models H3K4me3 Data to Identify Signaling Molecules that Improve Cell Fate Control and Maintenance.

Kamaraj US, Chen J, Katwadi K, Ouyang JF, Yang Sun YB, Lim YM, Liu X, Handoko L, Polo JM, Petretto E, Rackham OJL. Kamaraj US, et al. Among authors: ouyang jf. Cell Syst. 2020 Nov 18;11(5):509-522.e10. doi: 10.1016/j.cels.2020.09.004. Epub 2020 Oct 9. Cell Syst. 2020. PMID: 33038298 Free article.

9

Challenges for Computational Stem Cell Biology: A Discussion for the Field.

Rackham O, Cahan P, Mah N, Morris S, Ouyang JF, Plant AL, Tanaka Y, Wells CA. Rackham O, et al. Among authors: ouyang jf. Stem Cell Reports. 2021 Jan 12;16(1):3-9. doi: 10.1016/j.stemcr.2020.12.015. Stem Cell Reports. 2021. PMID: 33440181 Free PMC article.

10

Evaluating Capture Sequence Performance for Single-Cell CRISPR Activation Experiments.

Choo XY, Lim YM, Katwadi K, Yap L, Tryggvason K, Sun AX, Li S, Handoko L, Ouyang JF, Rackham OJL. Choo XY, et al. Among authors: ouyang jf. ACS Synth Biol. 2021 Mar 19;10(3):640-645. doi: 10.1021/acssynbio.0c00499. Epub 2021 Feb 24. ACS Synth Biol. 2021. PMID: 33625849 Free article.

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