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The scverse project provides a computational ecosystem for single-cell omics data analysis.
Virshup I, Bredikhin D, Heumos L, Palla G, Sturm G, Gayoso A, Kats I, Koutrouli M; Scverse Community; Berger B, Pe'er D, Regev A, Teichmann SA, Finotello F, Wolf FA, Yosef N, Stegle O, Theis FJ. Virshup I, et al. Among authors: kats i. Nat Biotechnol. 2023 May;41(5):604-606. doi: 10.1038/s41587-023-01733-8. Nat Biotechnol. 2023. PMID: 37037904 No abstract available.
MUON: multimodal omics analysis framework.
Bredikhin D, Kats I, Stegle O. Bredikhin D, et al. Among authors: kats i. Genome Biol. 2022 Feb 1;23(1):42. doi: 10.1186/s13059-021-02577-8. Genome Biol. 2022. PMID: 35105358 Free PMC article.
Spatial multiomics map of trophoblast development in early pregnancy.
Arutyunyan A, Roberts K, Troulé K, Wong FCK, Sheridan MA, Kats I, Garcia-Alonso L, Velten B, Hoo R, Ruiz-Morales ER, Sancho-Serra C, Shilts J, Handfield LF, Marconato L, Tuck E, Gardner L, Mazzeo CI, Li Q, Kelava I, Wright GJ, Prigmore E, Teichmann SA, Bayraktar OA, Moffett A, Stegle O, Turco MY, Vento-Tormo R. Arutyunyan A, et al. Among authors: kats i. Nature. 2023 Apr;616(7955):143-151. doi: 10.1038/s41586-023-05869-0. Epub 2023 Mar 29. Nature. 2023. PMID: 36991123 Free PMC article.
SpatialData: an open and universal data framework for spatial omics.
Marconato L, Palla G, Yamauchi KA, Virshup I, Heidari E, Treis T, Vierdag WM, Toth M, Stockhaus S, Shrestha RB, Rombaut B, Pollaris L, Lehner L, Vöhringer H, Kats I, Saeys Y, Saka SK, Huber W, Gerstung M, Moore J, Theis FJ, Stegle O. Marconato L, et al. Among authors: kats i. Nat Methods. 2024 Mar 20. doi: 10.1038/s41592-024-02212-x. Online ahead of print. Nat Methods. 2024. PMID: 38509327
Genome-wide C-SWAT library for high-throughput yeast genome tagging.
Meurer M, Duan Y, Sass E, Kats I, Herbst K, Buchmuller BC, Dederer V, Huber F, Kirrmaier D, Štefl M, Van Laer K, Dick TP, Lemberg MK, Khmelinskii A, Levy ED, Knop M. Meurer M, et al. Among authors: kats i. Nat Methods. 2018 Aug;15(8):598-600. doi: 10.1038/s41592-018-0045-8. Epub 2018 Jul 9. Nat Methods. 2018. PMID: 29988096
Timer-based proteomic profiling of the ubiquitin-proteasome system reveals a substrate receptor of the GID ubiquitin ligase.
Kong KE, Fischer B, Meurer M, Kats I, Li Z, Rühle F, Barry JD, Kirrmaier D, Chevyreva V, San Luis BJ, Costanzo M, Huber W, Andrews BJ, Boone C, Knop M, Khmelinskii A. Kong KE, et al. Among authors: kats i. Mol Cell. 2021 Jun 3;81(11):2460-2476.e11. doi: 10.1016/j.molcel.2021.04.018. Epub 2021 May 10. Mol Cell. 2021. PMID: 33974913 Free PMC article.
Creating functional engineered variants of the single-module non-ribosomal peptide synthetase IndC by T domain exchange.
Beer R, Herbst K, Ignatiadis N, Kats I, Adlung L, Meyer H, Niopek D, Christiansen T, Georgi F, Kurzawa N, Meichsner J, Rabe S, Riedel A, Sachs J, Schessner J, Schmidt F, Walch P, Niopek K, Heinemann T, Eils R, Di Ventura B. Beer R, et al. Among authors: kats i. Mol Biosyst. 2014 Jul;10(7):1709-18. doi: 10.1039/c3mb70594c. Mol Biosyst. 2014. PMID: 24457530
73 results