Favate J - Search Results

1

NADcapPro and circNC: methods for accurate profiling of NAD and non-canonical RNA caps in eukaryotes.

Sharma S, Yang J, Favate J, Shah P, Kiledjian M. Sharma S, et al. Among authors: favate j. Commun Biol. 2023 Apr 13;6(1):406. doi: 10.1038/s42003-023-04774-6. Commun Biol. 2023. PMID: 37055518 Free PMC article.

2

O-GlcNAcylation alters the selection of mRNAs for translation and promotes 4E-BP1-dependent mitochondrial dysfunction in the retina.

Dierschke SK, Miller WP, Favate JS, Shah P, Imamura Kawasawa Y, Salzberg AC, Kimball SR, Jefferson LS, Dennis MD. Dierschke SK, et al. J Biol Chem. 2019 Apr 5;294(14):5508-5520. doi: 10.1074/jbc.RA119.007494. Epub 2019 Feb 7. J Biol Chem. 2019. PMID: 30733333 Free PMC article.

3

Exploring Ribosome-Positioning on Translating Transcripts with Ribosome Profiling.

Cope AL, Vellappan S, Favate JS, Skalenko KS, Yadavalli SS, Shah P. Cope AL, et al. Methods Mol Biol. 2022;2404:83-110. doi: 10.1007/978-1-0716-1851-6_5. Methods Mol Biol. 2022. PMID: 34694605

4

riboviz 2: a flexible and robust ribosome profiling data analysis and visualization workflow.

Cope AL, Anderson F, Favate J, Jackson M, Mok A, Kurowska A, Liu J, MacKenzie E, Shivakumar V, Tilton P, Winterbourne SM, Xue S, Kavoussanakis K, Lareau LF, Shah P, Wallace EWJ. Cope AL, et al. Among authors: favate j. Bioinformatics. 2022 Apr 12;38(8):2358-2360. doi: 10.1093/bioinformatics/btac093. Bioinformatics. 2022. PMID: 35157051 Free PMC article.

5

IMP1/IGF2BP1 in human colorectal cancer extracellular vesicles.

Kuhn M, Zhang Y, Favate J, Morita M, Blucher A, Das S, Liang S, Preet R, Parham LR, Williams KN, Molugu S, Armstrong RJ, Zhang W, Yang J, Hamilton KE, Dixon DA, Mills G, Morgan TK, Shah P, Andres SF. Kuhn M, et al. Among authors: favate j. Am J Physiol Gastrointest Liver Physiol. 2022 Dec 1;323(6):G571-G585. doi: 10.1152/ajpgi.00121.2022. Epub 2022 Oct 4. Am J Physiol Gastrointest Liver Physiol. 2022. PMID: 36194131 Free PMC article.

6

The landscape of transcriptional and translational changes over 22 years of bacterial adaptation.

Favate JS, Liang S, Cope AL, Yadavalli SS, Shah P. Favate JS, et al. Elife. 2022 Oct 10;11:e81979. doi: 10.7554/eLife.81979. Elife. 2022. PMID: 36214449 Free PMC article.

7

The hypoxia response pathway promotes PEP carboxykinase and gluconeogenesis in C. elegans.

Vora M, Pyonteck SM, Popovitchenko T, Matlack TL, Prashar A, Kane NS, Favate J, Shah P, Rongo C. Vora M, et al. Among authors: favate j. Nat Commun. 2022 Oct 18;13(1):6168. doi: 10.1038/s41467-022-33849-x. Nat Commun. 2022. PMID: 36257965 Free PMC article.

8

Reply to: Potential contribution of PEP carboxykinase-dependent malate dismutation to the hypoxia response in C. elegans.

Vora M, Pyonteck SM, Popovitchenko T, Matlack TL, Prashar A, Kane NS, Favate J, Shah P, Rongo C. Vora M, et al. Among authors: favate j. Nat Commun. 2023 Jul 4;14(1):3937. doi: 10.1038/s41467-023-39511-4. Nat Commun. 2023. PMID: 37402706 Free PMC article. No abstract available.

9

Description of Imasa heleensis, gen. nov., sp. nov. (Imasidae, fam. nov.), a Deep-Branching Marine Malawimonad and Possible Key Taxon in Understanding Early Eukaryotic Evolution.

Heiss AA, Warring SD, Lukacs K, Favate J, Yang A, Gyaltshen Y, Filardi C, Simpson AGB, Kim E. Heiss AA, et al. Among authors: favate j. J Eukaryot Microbiol. 2021 Mar;68(2):e12837. doi: 10.1111/jeu.12837. Epub 2021 Jan 19. J Eukaryot Microbiol. 2021. PMID: 33274482

10

Dopamine release and dopamine-related gene expression in the amygdala are modulated by the gastrin-releasing peptide in opposite directions during stress-enhanced fear learning and extinction.

Morishita Y, Fuentes I, Gonzalez-Salinas S, Favate J, Mejaes J, Zushida K, Nishi A, Hevi C, Goldsmith N, Buyske S, Sillivan SE, Miller CA, Kandel ER, Uchida S, Shah P, Alarcon JM, Barker DJ, Shumyatsky GP. Morishita Y, et al. Among authors: favate j. Mol Psychiatry. 2024 Nov 23. doi: 10.1038/s41380-024-02843-8. Online ahead of print. Mol Psychiatry. 2024. PMID: 39580604

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