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Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases.
Zeng B, Bendl J, Deng C, Lee D, Misir R, Reach SM, Kleopoulos SP, Auluck P, Marenco S, Lewis DA, Haroutunian V, Ahituv N, Fullard JF, Hoffman GE, Roussos P. Zeng B, et al. Among authors: bendl j. bioRxiv [Preprint]. 2023 Mar 2:2023.03.02.530826. doi: 10.1101/2023.03.02.530826. bioRxiv. 2023. Update in: Science. 2024 May 24;384(6698):eadh4265. doi: 10.1126/science.adh4265. PMID: 37090548 Free PMC article. Updated. Preprint.
FireProt: web server for automated design of thermostable proteins.
Musil M, Stourac J, Bendl J, Brezovsky J, Prokop Z, Zendulka J, Martinek T, Bednar D, Damborsky J. Musil M, et al. Among authors: bendl j. Nucleic Acids Res. 2017 Jul 3;45(W1):W393-W399. doi: 10.1093/nar/gkx285. Nucleic Acids Res. 2017. PMID: 28449074 Free PMC article.
Computational tools for designing smart libraries.
Sebestova E, Bendl J, Brezovsky J, Damborsky J. Sebestova E, et al. Among authors: bendl j. Methods Mol Biol. 2014;1179:291-314. doi: 10.1007/978-1-4939-1053-3_20. Methods Mol Biol. 2014. PMID: 25055786
An atlas of chromatin accessibility in the adult human brain.
Fullard JF, Hauberg ME, Bendl J, Egervari G, Cirnaru MD, Reach SM, Motl J, Ehrlich ME, Hurd YL, Roussos P. Fullard JF, et al. Among authors: bendl j. Genome Res. 2018 Aug;28(8):1243-1252. doi: 10.1101/gr.232488.117. Epub 2018 Jun 26. Genome Res. 2018. PMID: 29945882 Free PMC article.
The Mount Sinai cohort of large-scale genomic, transcriptomic and proteomic data in Alzheimer's disease.
Wang M, Beckmann ND, Roussos P, Wang E, Zhou X, Wang Q, Ming C, Neff R, Ma W, Fullard JF, Hauberg ME, Bendl J, Peters MA, Logsdon B, Wang P, Mahajan M, Mangravite LM, Dammer EB, Duong DM, Lah JJ, Seyfried NT, Levey AI, Buxbaum JD, Ehrlich M, Gandy S, Katsel P, Haroutunian V, Schadt E, Zhang B. Wang M, et al. Among authors: bendl j. Sci Data. 2018 Sep 11;5:180185. doi: 10.1038/sdata.2018.185. Sci Data. 2018. PMID: 30204156 Free PMC article.
154 results