Chen S - Search Results

1

D-SPIN constructs gene regulatory network models from multiplexed scRNA-seq data revealing organizing principles of cellular perturbation response.

Jiang J, Chen S, Tsou T, McGinnis CS, Khazaei T, Zhu Q, Park JH, Strazhnik IM, Vielmetter J, Gong Y, Hanna J, Chow ED, Sivak DA, Gartner ZJ, Thomson M. Jiang J, et al. Among authors: chen s. bioRxiv [Preprint]. 2024 Jun 4:2023.04.19.537364. doi: 10.1101/2023.04.19.537364. bioRxiv. 2024. PMID: 37131803 Free PMC article. Preprint.

2

Interrogating cellular fate decisions with high-throughput arrays of multiplexed cellular communities.

Chen S, Bremer AW, Scheideler OJ, Na YS, Todhunter ME, Hsiao S, Bomdica PR, Maharbiz MM, Gartner ZJ, Schaffer DV. Chen S, et al. Nat Commun. 2016 Jan 12;7:10309. doi: 10.1038/ncomms10309. Nat Commun. 2016. PMID: 26754526 Free PMC article.

3

Dissecting heterogeneous cell populations across drug and disease conditions with PopAlign.

Chen S, Rivaud P, Park JH, Tsou T, Charles E, Haliburton JR, Pichiorri F, Thomson M. Chen S, et al. Proc Natl Acad Sci U S A. 2020 Nov 17;117(46):28784-28794. doi: 10.1073/pnas.2005990117. Epub 2020 Oct 30. Proc Natl Acad Sci U S A. 2020. PMID: 33127759 Free PMC article.

4

Deep Parallel Characterization of AAV Tropism and AAV-Mediated Transcriptional Changes via Single-Cell RNA Sequencing.

Brown D, Altermatt M, Dobreva T, Chen S, Wang A, Thomson M, Gradinaru V. Brown D, et al. Among authors: chen s. Front Immunol. 2021 Oct 21;12:730825. doi: 10.3389/fimmu.2021.730825. eCollection 2021. Front Immunol. 2021. PMID: 34759919 Free PMC article.

5

Recovery of missing single-cell RNA-sequencing data with optimized transcriptomic references.

Pool AH, Poldsam H, Chen S, Thomson M, Oka Y. Pool AH, et al. Among authors: chen s. Nat Methods. 2023 Oct;20(10):1506-1515. doi: 10.1038/s41592-023-02003-w. Epub 2023 Sep 11. Nat Methods. 2023. PMID: 37697162

6

Minimal gene set discovery in single-cell mRNA-seq datasets with ActiveSVM.

Chen X, Chen S, Thomson M. Chen X, et al. Among authors: chen s. Nat Comput Sci. 2022 Jun;2(6):387-398. doi: 10.1038/s43588-022-00263-8. Epub 2022 Jun 27. Nat Comput Sci. 2022. PMID: 38177588 Free PMC article.

7

Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins.

Gehring J, Hwee Park J, Chen S, Thomson M, Pachter L. Gehring J, et al. Among authors: chen s. Nat Biotechnol. 2020 Jan;38(1):35-38. doi: 10.1038/s41587-019-0372-z. Epub 2019 Dec 23. Nat Biotechnol. 2020. PMID: 31873215

8

Integrated measurement of intracellular proteins and transcripts in single cells.

Xu AM, Liu Q, Takata KL, Jeoung S, Su Y, Antoshechkin I, Chen S, Thomson M, Heath JR. Xu AM, et al. Among authors: chen s. Lab Chip. 2018 Oct 23;18(21):3251-3262. doi: 10.1039/c8lc00639c. Lab Chip. 2018. PMID: 30178802 Free PMC article.

9

Reconstructing aspects of human embryogenesis with pluripotent stem cells.

Sozen B, Jorgensen V, Weatherbee BAT, Chen S, Zhu M, Zernicka-Goetz M. Sozen B, et al. Among authors: chen s. Nat Commun. 2021 Sep 21;12(1):5550. doi: 10.1038/s41467-021-25853-4. Nat Commun. 2021. PMID: 34548496 Free PMC article.

10

Correction: Regimen comprising GLP‑1 receptor agonist and basal insulin can decrease the effect of food on glycemic variability compared to a pre‑mixed insulin regimen.

Lin YH, Lin CH, Huang YY, Chen HY, Tai AS, Fu SC, Hsieh SH, Sun JH, Chen ST, Lin SH. Lin YH, et al. Among authors: chen st. Eur J Med Res. 2024 Nov 28;29(1):565. doi: 10.1186/s40001-024-02149-z. Eur J Med Res. 2024. PMID: 39609905 No abstract available.

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