Robinson MD - Search Results

1

Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability.

Sonrel A, Luetge A, Soneson C, Mallona I, Germain PL, Knyazev S, Gilis J, Gerber R, Seurinck R, Paul D, Sonder E, Crowell HL, Fanaswala I, Al-Ajami A, Heidari E, Schmeing S, Milosavljevic S, Saeys Y, Mangul S, Robinson MD. Sonrel A, et al. Among authors: robinson md. Genome Biol. 2023 May 17;24(1):119. doi: 10.1186/s13059-023-02962-5. Genome Biol. 2023. PMID: 37198712 Free PMC article.

2

Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage.

Soneson C, Matthes KL, Nowicka M, Law CW, Robinson MD. Soneson C, et al. Among authors: robinson md. Genome Biol. 2016 Jan 26;17:12. doi: 10.1186/s13059-015-0862-3. Genome Biol. 2016. PMID: 26813113 Free PMC article.

3

Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences.

Soneson C, Love MI, Robinson MD. Soneson C, et al. Among authors: robinson md. F1000Res. 2015 Dec 30;4:1521. doi: 10.12688/f1000research.7563.2. eCollection 2015. F1000Res. 2015. PMID: 26925227 Free PMC article.

4

iCOBRA: open, reproducible, standardized and live method benchmarking.

Soneson C, Robinson MD. Soneson C, et al. Among authors: robinson md. Nat Methods. 2016 Apr;13(4):283. doi: 10.1038/nmeth.3805. Nat Methods. 2016. PMID: 27027585 Free article. No abstract available.

5

Faithful mRNA splicing depends on the Prp19 complex subunit faint sausage and is required for tracheal branching morphogenesis in Drosophila.

Sauerwald J, Soneson C, Robinson MD, Luschnig S. Sauerwald J, et al. Among authors: robinson md. Development. 2017 Feb 15;144(4):657-663. doi: 10.1242/dev.144535. Epub 2017 Jan 13. Development. 2017. PMID: 28087625 Free article.

6

CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets.

Nowicka M, Krieg C, Crowell HL, Weber LM, Hartmann FJ, Guglietta S, Becher B, Levesque MP, Robinson MD. Nowicka M, et al. Among authors: robinson md. F1000Res. 2017 May 26;6:748. doi: 10.12688/f1000research.11622.3. eCollection 2017. F1000Res. 2017. PMID: 28663787 Free PMC article.

7

stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage.

Van den Berge K, Soneson C, Robinson MD, Clement L. Van den Berge K, et al. Among authors: robinson md. Genome Biol. 2017 Aug 7;18(1):151. doi: 10.1186/s13059-017-1277-0. Genome Biol. 2017. PMID: 28784146 Free PMC article.

8

Towards unified quality verification of synthetic count data with countsimQC.

Soneson C, Robinson MD. Soneson C, et al. Among authors: robinson md. Bioinformatics. 2018 Feb 15;34(4):691-692. doi: 10.1093/bioinformatics/btx631. Bioinformatics. 2018. PMID: 29028961 Free PMC article.

9

Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications.

Van den Berge K, Perraudeau F, Soneson C, Love MI, Risso D, Vert JP, Robinson MD, Dudoit S, Clement L. Van den Berge K, et al. Among authors: robinson md. Genome Biol. 2018 Feb 26;19(1):24. doi: 10.1186/s13059-018-1406-4. Genome Biol. 2018. PMID: 29478411 Free PMC article.

10

Bias, robustness and scalability in single-cell differential expression analysis.

Soneson C, Robinson MD. Soneson C, et al. Among authors: robinson md. Nat Methods. 2018 Apr;15(4):255-261. doi: 10.1038/nmeth.4612. Epub 2018 Feb 26. Nat Methods. 2018. PMID: 29481549

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

358 results

Search Page

Filters