Gorodkin J - Search Results

1

Letter to the editor: Testing on external independent datasets is necessary to corroborate machine learning model improvement.

Corsi GI, Anthon C, Gorodkin J. Corsi GI, et al. Among authors: gorodkin j. Bioinformatics. 2023 Jun 1;39(6):btad327. doi: 10.1093/bioinformatics/btad327. Bioinformatics. 2023. PMID: 37202356 Free PMC article. No abstract available.

2

Semiautomated improvement of RNA alignments.

Andersen ES, Lind-Thomsen A, Knudsen B, Kristensen SE, Havgaard JH, Torarinsson E, Larsen N, Zwieb C, Sestoft P, Kjems J, Gorodkin J. Andersen ES, et al. Among authors: gorodkin j. RNA. 2007 Nov;13(11):1850-9. doi: 10.1261/rna.215407. Epub 2007 Sep 5. RNA. 2007. PMID: 17804647 Free PMC article.

3

Protein distance constraints predicted by neural networks and probability density functions.

Lund O, Frimand K, Gorodkin J, Bohr H, Bohr J, Hansen J, Brunak S. Lund O, et al. Among authors: gorodkin j. Protein Eng. 1997 Nov;10(11):1241-8. doi: 10.1093/protein/10.11.1241. Protein Eng. 1997. PMID: 9514112

4

Using sequence motifs for enhanced neural network prediction of protein distance constraints.

Gorodkin J, Lund O, Andersen CA, Brunak S. Gorodkin J, et al. Proc Int Conf Intell Syst Mol Biol. 1999:95-105. Proc Int Conf Intell Syst Mol Biol. 1999. PMID: 10786291

5

Universal distribution of saliencies for pruning in layered neural networks.

Gorodkin J, Hansen LK, Lautrup B, Solla SA. Gorodkin J, et al. Int J Neural Syst. 1997 Oct-Dec;8(5-6):489-98. doi: 10.1142/s0129065797000471. Int J Neural Syst. 1997. PMID: 10065831

6

Finding common sequence and structure motifs in a set of RNA sequences.

Gorodkin J, Heyer LJ, Stormo GD. Gorodkin J, et al. Proc Int Conf Intell Syst Mol Biol. 1997;5:120-3. Proc Int Conf Intell Syst Mol Biol. 1997. PMID: 9322025

7

The tmRDB and SRPDB resources.

Andersen ES, Rosenblad MA, Larsen N, Westergaard JC, Burks J, Wower IK, Wower J, Gorodkin J, Samuelsson T, Zwieb C. Andersen ES, et al. Among authors: gorodkin j. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D163-8. doi: 10.1093/nar/gkj142. Nucleic Acids Res. 2006. PMID: 16381838 Free PMC article.

8

Fast local fragment chaining using sum-of-pair gap costs.

Otto C, Hoffmann S, Gorodkin J, Stadler PF. Otto C, et al. Among authors: gorodkin j. Algorithms Mol Biol. 2011 Mar 18;6:4. doi: 10.1186/1748-7188-6-4. Algorithms Mol Biol. 2011. PMID: 21418573 Free PMC article.

9

A mini-greedy algorithm for faster structural RNA stem-loop search.

Gorodkin J, Lyngso RB, Stormo GD. Gorodkin J, et al. Genome Inform. 2001;12:184-93. Genome Inform. 2001. PMID: 11791237

10

Evolutionary rate variation and RNA secondary structure prediction.

Knudsen B, Andersen ES, Damgaard C, Kjems J, Gorodkin J. Knudsen B, et al. Among authors: gorodkin j. Comput Biol Chem. 2004 Jul;28(3):219-26. doi: 10.1016/j.compbiolchem.2004.04.001. Comput Biol Chem. 2004. PMID: 15261152

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