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A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts AM, Gunturkun HM, Guryev V, Hourlier T, Howe K, Huang J, Kalbfleisch T, Kim P, Li L, Mahaffey S, Martin FJ, Mohammadi P, Ozel AB, Polesskaya O, Pravenec M, Prins P, Sebat J, Smith JR, Solberg Woods LC, Tabakoff B, Tracey A, Uliano-Silva M, Villani F, Wang H, Sharp BM, Telese F, Jiang Z, Saba L, Wang X, Murphy TD, Palmer AA, Kwitek AE, Dwinell MR, Williams RW, Li JZ, Chen H. de Jong TV, et al. Among authors: tutaj m. bioRxiv [Preprint]. 2023 Sep 28:2023.04.13.536694. doi: 10.1101/2023.04.13.536694. bioRxiv. 2023. Update in: Cell Genom. 2024 Apr 10;4(4):100527. doi: 10.1016/j.xgen.2024.100527. PMID: 37214860 Free PMC article. Updated. Preprint.
A Primer for the Rat Genome Database (RGD).
Laulederkind SJF, Hayman GT, Wang SJ, Smith JR, Petri V, Hoffman MJ, De Pons J, Tutaj MA, Ghiasvand O, Tutaj M, Thota J, Dwinell MR, Shimoyama M. Laulederkind SJF, et al. Among authors: tutaj ma, tutaj m. Methods Mol Biol. 2018;1757:163-209. doi: 10.1007/978-1-4939-7737-6_8. Methods Mol Biol. 2018. PMID: 29761460 Free PMC article.
Rat Genome Databases, Repositories, and Tools.
Laulederkind SJF, Hayman GT, Wang SJ, Hoffman MJ, Smith JR, Bolton ER, De Pons J, Tutaj MA, Tutaj M, Thota J, Dwinell MR, Shimoyama M. Laulederkind SJF, et al. Among authors: tutaj ma, tutaj m. Methods Mol Biol. 2019;2018:71-96. doi: 10.1007/978-1-4939-9581-3_3. Methods Mol Biol. 2019. PMID: 31228152
The Year of the Rat: The Rat Genome Database at 20: a multi-species knowledgebase and analysis platform.
Smith JR, Hayman GT, Wang SJ, Laulederkind SJF, Hoffman MJ, Kaldunski ML, Tutaj M, Thota J, Nalabolu HS, Ellanki SLR, Tutaj MA, De Pons JL, Kwitek AE, Dwinell MR, Shimoyama ME. Smith JR, et al. Among authors: tutaj m, tutaj ma. Nucleic Acids Res. 2020 Jan 8;48(D1):D731-D742. doi: 10.1093/nar/gkz1041. Nucleic Acids Res. 2020. PMID: 31713623 Free PMC article.
The Rat Genome Database (RGD) facilitates genomic and phenotypic data integration across multiple species for biomedical research.
Kaldunski ML, Smith JR, Hayman GT, Brodie K, De Pons JL, Demos WM, Gibson AC, Hill ML, Hoffman MJ, Lamers L, Laulederkind SJF, Nalabolu HS, Thorat K, Thota J, Tutaj M, Tutaj MA, Vedi M, Wang SJ, Zacher S, Dwinell MR, Kwitek AE. Kaldunski ML, et al. Among authors: tutaj m, tutaj ma. Mamm Genome. 2022 Mar;33(1):66-80. doi: 10.1007/s00335-021-09932-x. Epub 2021 Nov 5. Mamm Genome. 2022. PMID: 34741192 Free PMC article.
MOET: a web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses.
Vedi M, Nalabolu HS, Lin CW, Hoffman MJ, Smith JR, Brodie K, De Pons JL, Demos WM, Gibson AC, Hayman GT, Hill ML, Kaldunski ML, Lamers L, Laulederkind SJF, Thorat K, Thota J, Tutaj M, Tutaj MA, Wang SJ, Zacher S, Dwinell MR, Kwitek AE. Vedi M, et al. Among authors: tutaj m, tutaj ma. Genetics. 2022 Apr 4;220(4):iyac005. doi: 10.1093/genetics/iyac005. Genetics. 2022. PMID: 35380657 Free PMC article.
64 results