Rifaioğlu AS - Search Results

1

Transfer learning for drug-target interaction prediction.

Dalkıran A, Atakan A, Rifaioğlu AS, Martin MJ, Atalay RÇ, Acar AC, Doğan T, Atalay V. Dalkıran A, et al. Among authors: rifaioglu as. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i103-i110. doi: 10.1093/bioinformatics/btad234. Bioinformatics. 2023. PMID: 37387156 Free PMC article.

2

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases.

Rifaioglu AS, Atas H, Martin MJ, Cetin-Atalay R, Atalay V, Doğan T. Rifaioglu AS, et al. Brief Bioinform. 2019 Sep 27;20(5):1878-1912. doi: 10.1093/bib/bby061. Brief Bioinform. 2019. PMID: 30084866 Free PMC article. Review.

3

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature.

Dalkiran A, Rifaioglu AS, Martin MJ, Cetin-Atalay R, Atalay V, Doğan T. Dalkiran A, et al. Among authors: rifaioglu as. BMC Bioinformatics. 2018 Sep 21;19(1):334. doi: 10.1186/s12859-018-2368-y. BMC Bioinformatics. 2018. PMID: 30241466 Free PMC article.

4

iBioProVis: interactive visualization and analysis of compound bioactivity space.

Donmez A, Rifaioglu AS, Acar A, Doğan T, Cetin-Atalay R, Atalay V. Donmez A, et al. Among authors: rifaioglu as. Bioinformatics. 2020 Aug 15;36(14):4227-4230. doi: 10.1093/bioinformatics/btaa496. Bioinformatics. 2020. PMID: 32407491 Free PMC article.

5

MDeePred: novel multi-channel protein featurization for deep learning-based binding affinity prediction in drug discovery.

Rifaioglu AS, Cetin Atalay R, Cansen Kahraman D, Doğan T, Martin M, Atalay V. Rifaioglu AS, et al. Bioinformatics. 2021 May 5;37(5):693-704. doi: 10.1093/bioinformatics/btaa858. Bioinformatics. 2021. PMID: 33067636

6

DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations.

Rifaioglu AS, Nalbat E, Atalay V, Martin MJ, Cetin-Atalay R, Doğan T. Rifaioglu AS, et al. Chem Sci. 2020 Jan 8;11(9):2531-2557. doi: 10.1039/c9sc03414e. eCollection 2020 Mar 7. Chem Sci. 2020. PMID: 33209251 Free PMC article.

7

SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins.

Özsarı G, Rifaioglu AS, Atakan A, Doğan T, Martin MJ, Çetin Atalay R, Atalay V. Özsarı G, et al. Among authors: rifaioglu as. Bioinformatics. 2022 Sep 2;38(17):4226-4229. doi: 10.1093/bioinformatics/btac458. Bioinformatics. 2022. PMID: 35801913

8

Large-scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants.

Rifaioglu AS, Doğan T, Saraç ÖS, Ersahin T, Saidi R, Atalay MV, Martin MJ, Cetin-Atalay R. Rifaioglu AS, et al. Proteins. 2018 Feb;86(2):135-151. doi: 10.1002/prot.25416. Epub 2017 Nov 29. Proteins. 2018. PMID: 29098713

9

CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations.

Doğan T, Atas H, Joshi V, Atakan A, Rifaioglu AS, Nalbat E, Nightingale A, Saidi R, Volynkin V, Zellner H, Cetin-Atalay R, Martin M, Atalay V. Doğan T, et al. Among authors: rifaioglu as. Nucleic Acids Res. 2021 Sep 20;49(16):e96. doi: 10.1093/nar/gkab543. Nucleic Acids Res. 2021. PMID: 34181736 Free PMC article.

10

Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools.

Cetin-Atalay R, Kahraman DC, Nalbat E, Rifaioglu AS, Atakan A, Donmez A, Atas H, Atalay MV, Acar AC, Doğan T. Cetin-Atalay R, et al. Among authors: rifaioglu as. J Gastrointest Cancer. 2021 Dec;52(4):1266-1276. doi: 10.1007/s12029-021-00768-x. Epub 2021 Dec 15. J Gastrointest Cancer. 2021. PMID: 34910274 Review.

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