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Creating a biomedical knowledge base by addressing GPT inaccurate responses and benchmarking context.
Darnell SS, Overall RW, Guarracino A, Colonna V, Villani F, Garrison E, Isaac A, Muli P, Muriithi FM, Kabui A, Kilyungi M, Lisso F, Kibet A, Muhia B, Nijveen H, Yousefi S, Ashbrook D, Huang P, Suh GE, Umar M, Batten C, Chen H, Sen Ś, Williams RW, Prins P. Darnell SS, et al. Among authors: prins p. bioRxiv [Preprint]. 2024 Oct 21:2024.10.16.618663. doi: 10.1101/2024.10.16.618663. bioRxiv. 2024. PMID: 39463999 Free PMC article. Preprint.
Building pangenome graphs.
Garrison E, Guarracino A, Heumos S, Villani F, Bao Z, Tattini L, Hagmann J, Vorbrugg S, Marco-Sola S, Kubica C, Ashbrook DG, Thorell K, Rusholme-Pilcher RL, Liti G, Rudbeck E, Golicz AA, Nahnsen S, Yang Z, Mwaniki MN, Nobrega FL, Wu Y, Chen H, de Ligt J, Sudmant PH, Huang S, Weigel D, Soranzo N, Colonna V, Williams RW, Prins P. Garrison E, et al. Among authors: prins p. Nat Methods. 2024 Nov;21(11):2008-2012. doi: 10.1038/s41592-024-02430-3. Epub 2024 Oct 21. Nat Methods. 2024. PMID: 39433878
Cluster-efficient pangenome graph construction with nf-core/pangenome.
Heumos S, Heuer ML, Hanssen F, Heumos L, Guarracino A, Heringer P, Ehmele P, Prins P, Garrison E, Nahnsen S. Heumos S, et al. Among authors: prins p. Bioinformatics. 2024 Nov 1;40(11):btae609. doi: 10.1093/bioinformatics/btae609. Bioinformatics. 2024. PMID: 39400346 Free PMC article.
Seroprevalence and risk factors for Lassa virus infection in South-West and North-Central Nigeria: a community-based cross-sectional study.
Tiamiyu AB, Adegbite OA, Freides O, Frndak S, Mohammed SS, Broach E, Lombardi K, Anyebe V, Akiga R, Okeke NC, Feyisayo JE, Ugwuezumba O, Akinde C, Osuji A, Agu N, Analogbei T, Ekweremadu C, Bartolanzo D, Prins P, Fan Y, Emekaili D, Abah F, Chiwetelu V, Dike P, Isaiah E, Ayogu M, Ogunkelu E, Agbaim UC, Bukunmi A, Adamu Y, Mebrahtu T, Zuppe A, Johnston M, Modjarrad K, Meri H, Parker Z, Akinwale E, McCauley MD, Schluck G, King DB, Eller LA, Okeji N, Ayemoba OR, Collins ND, Iroezindu MO, Hakre S; EID023 Lassa study team. Tiamiyu AB, et al. Among authors: prins p. BMC Infect Dis. 2024 Oct 8;24(1):1118. doi: 10.1186/s12879-024-09954-1. BMC Infect Dis. 2024. PMID: 39375602 Free PMC article.
Pangenome graph layout by Path-Guided Stochastic Gradient Descent.
Heumos S, Guarracino A, Schmelzle JM, Li J, Zhang Z, Hagmann J, Nahnsen S, Prins P, Garrison E. Heumos S, et al. Among authors: prins p. Bioinformatics. 2024 Jul 1;40(7):btae363. doi: 10.1093/bioinformatics/btae363. Bioinformatics. 2024. PMID: 38960860 Free PMC article.
227 results