Koide A - Search Results

1

Exploring switch II pocket conformation of KRAS(G12D) with mutant-selective monobody inhibitors.

Akkapeddi P, Hattori T, Khan I, Glasser E, Koide A, Ketavarapu G, Whaby M, Zuberi M, Teng KW, Lefler J, Maso L, Bang I, Ostrowski MC, O'Bryan JP, Koide S. Akkapeddi P, et al. Among authors: koide s, koide a. Proc Natl Acad Sci U S A. 2023 Jul 11;120(28):e2302485120. doi: 10.1073/pnas.2302485120. Epub 2023 Jul 3. Proc Natl Acad Sci U S A. 2023. PMID: 37399416 Free PMC article.

2

A stable single-layer beta-sheet without a hydrophobic core.

Pham TN, Koide A, Koide S. Pham TN, et al. Among authors: koide s, koide a. Nat Struct Biol. 1998 Feb;5(2):115-9. doi: 10.1038/nsb0298-115. Nat Struct Biol. 1998. PMID: 9461076

3

The fibronectin type III domain as a scaffold for novel binding proteins.

Koide A, Bailey CW, Huang X, Koide S. Koide A, et al. Among authors: koide s. J Mol Biol. 1998 Dec 11;284(4):1141-51. doi: 10.1006/jmbi.1998.2238. J Mol Biol. 1998. PMID: 9837732 Free article.

4

Solution conformation and amyloid-like fibril formation of a polar peptide derived from a beta-hairpin in the OspA single-layer beta-sheet.

Ohnishi S, Koide A, Koide S. Ohnishi S, et al. Among authors: koide s, koide a. J Mol Biol. 2000 Aug 11;301(2):477-89. doi: 10.1006/jmbi.2000.3980. J Mol Biol. 2000. PMID: 10926522 Free article.

5

The roles of turn formation and cross-strand interactions in fibrillization of peptides derived from the OspA single-layer beta-sheet.

Ohnishi S, Koide A, Koide S. Ohnishi S, et al. Among authors: koide s, koide a. Protein Sci. 2001 Oct;10(10):2083-92. doi: 10.1110/ps.15901. Protein Sci. 2001. PMID: 11567099 Free PMC article.

6

Probing protein conformational changes in living cells by using designer binding proteins: application to the estrogen receptor.

Koide A, Abbatiello S, Rothgery L, Koide S. Koide A, et al. Among authors: koide s. Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1253-8. doi: 10.1073/pnas.032665299. Epub 2002 Jan 29. Proc Natl Acad Sci U S A. 2002. PMID: 11818562 Free PMC article.

7

Engineered fibronectin type III domain with a RGDWXE sequence binds with enhanced affinity and specificity to human alphavbeta3 integrin.

Richards J, Miller M, Abend J, Koide A, Koide S, Dewhurst S. Richards J, et al. Among authors: koide s, koide a. J Mol Biol. 2003 Mar 7;326(5):1475-88. doi: 10.1016/s0022-2836(03)00082-2. J Mol Biol. 2003. PMID: 12595259

8

Exploring the potential of the monobody scaffold: effects of loop elongation on the stability of a fibronectin type III domain.

Batori V, Koide A, Koide S. Batori V, et al. Among authors: koide s, koide a. Protein Eng. 2002 Dec;15(12):1015-20. doi: 10.1093/protein/15.12.1015. Protein Eng. 2002. PMID: 12601141

9

Conformational heterogeneity of an equilibrium folding intermediate quantified and mapped by scanning mutagenesis.

Yan S, Gawlak G, Smith J, Silver L, Koide A, Koide S. Yan S, et al. Among authors: koide s, koide a. J Mol Biol. 2004 May 7;338(4):811-25. doi: 10.1016/j.jmb.2004.02.063. J Mol Biol. 2004. PMID: 15099747

10

High-affinity fragment complementation of a fibronectin type III domain and its application to stability enhancement.

Dutta S, Batori V, Koide A, Koide S. Dutta S, et al. Among authors: koide s, koide a. Protein Sci. 2005 Nov;14(11):2838-48. doi: 10.1110/ps.051603005. Epub 2005 Sep 30. Protein Sci. 2005. PMID: 16199661 Free PMC article.

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