Soupir AC - Search Results

1

A harmonized resource of integrated prostate cancer clinical, -omic, and signature features.

Laajala TD, Sreekanth V, Soupir AC, Creed JH, Halkola AS, Calboli FCF, Singaravelu K, Orman MV, Colin-Leitzinger C, Gerke T, Fridley BL, Tyekucheva S, Costello JC. Laajala TD, et al. Among authors: soupir ac. Sci Data. 2023 Jul 5;10(1):430. doi: 10.1038/s41597-023-02335-4. Sci Data. 2023. PMID: 37407670 Free PMC article.

2

spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data.

Creed JH, Wilson CM, Soupir AC, Colin-Leitzinger CM, Kimmel GJ, Ospina OE, Chakiryan NH, Markowitz J, Peres LC, Coghill A, Fridley BL. Creed JH, et al. Among authors: soupir ac. Bioinformatics. 2021 Dec 7;37(23):4584-4586. doi: 10.1093/bioinformatics/btab757. Bioinformatics. 2021. PMID: 34734969 Free PMC article.

3

Tumor immune cell clustering and its association with survival in African American women with ovarian cancer.

Wilson C, Soupir AC, Thapa R, Creed J, Nguyen J, Segura CM, Gerke T, Schildkraut JM, Peres LC, Fridley BL. Wilson C, et al. Among authors: soupir ac. PLoS Comput Biol. 2022 Mar 2;18(3):e1009900. doi: 10.1371/journal.pcbi.1009900. eCollection 2022 Mar. PLoS Comput Biol. 2022. PMID: 35235563 Free PMC article.

4

spatialGE: quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics.

Ospina OE, Wilson CM, Soupir AC, Berglund A, Smalley I, Tsai KY, Fridley BL. Ospina OE, et al. Among authors: soupir ac. Bioinformatics. 2022 Apr 28;38(9):2645-2647. doi: 10.1093/bioinformatics/btac145. Bioinformatics. 2022. PMID: 35258565 Free PMC article.

5

A Primer on Preprocessing, Visualization, Clustering, and Phenotyping of Barcode-Based Spatial Transcriptomics Data.

Ospina O, Soupir A, Fridley BL. Ospina O, et al. Methods Mol Biol. 2023;2629:115-140. doi: 10.1007/978-1-0716-2986-4_7. Methods Mol Biol. 2023. PMID: 36929076

6

Plasma Copy Number Alteration-Based Prognostic and Predictive Multi-Gene Risk Score in Metastatic Castration-Resistant Prostate Cancer.

Huang J, Du M, Soupir A, Wang L, Tan W, Kalari KR, Kilari D, Park J, Huang CC, Kohli M, Wang L. Huang J, et al. Cancers (Basel). 2022 Sep 28;14(19):4714. doi: 10.3390/cancers14194714. Cancers (Basel). 2022. PMID: 36230636 Free PMC article.

7

Novel role of prostate cancer risk variant rs7247241 on PPP1R14A isoform transition through allelic TF binding and CpG methylation.

Tian Y, Soupir A, Liu Q, Wu L, Huang CC, Park JY, Wang L. Tian Y, et al. Hum Mol Genet. 2022 May 19;31(10):1610-1621. doi: 10.1093/hmg/ddab347. Hum Mol Genet. 2022. PMID: 34849858 Free PMC article.

8

Detectable Lipidomes and Metabolomes by Different Plasma Exosome Isolation Methods in Healthy Controls and Patients with Advanced Prostate and Lung Cancer.

Soupir AC, Tian Y, Stewart PA, Nunez-Lopez YO, Manley BJ, Pellini B, Bloomer AM, Zhang J, Mo Q, Marchion DC, Liu M, Koomen JM, Siegel EM, Wang L. Soupir AC, et al. Int J Mol Sci. 2023 Jan 17;24(3):1830. doi: 10.3390/ijms24031830. Int J Mol Sci. 2023. PMID: 36768152 Free PMC article.

9

Proteogenomic, Epigenetic, and Clinical Implications of Recurrent Aberrant Splice Variants in Clear Cell Renal Cell Carcinoma.

Chang A, Chakiryan NH, Du D, Stewart PA, Zhang Y, Tian Y, Soupir AC, Bowers K, Fang B, Morganti A, Teer JK, Kim Y, Spiess PE, Chahoud J, Noble JD, Putney RM, Berglund AE, Robinson TJ, Koomen JM, Wang L, Manley BJ. Chang A, et al. Among authors: soupir ac. Eur Urol. 2022 Oct;82(4):354-362. doi: 10.1016/j.eururo.2022.05.021. Epub 2022 Jun 17. Eur Urol. 2022. PMID: 35718636 Free PMC article.

10

Cancer Detection and Classification by CpG Island Hypermethylation Signatures in Plasma Cell-Free DNA.

Huang J, Soupir AC, Schlick BD, Teng M, Sahin IH, Permuth JB, Siegel EM, Manley BJ, Pellini B, Wang L. Huang J, et al. Among authors: soupir ac. Cancers (Basel). 2021 Nov 9;13(22):5611. doi: 10.3390/cancers13225611. Cancers (Basel). 2021. PMID: 34830765 Free PMC article.

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