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On the Origins and Control of Community Types in the Human Microbiome.
Gibson TE, Bashan A, Cao HT, Weiss ST, Liu YY. Gibson TE, et al. Among authors: liu yy. PLoS Comput Biol. 2016 Feb 11;12(2):e1004688. doi: 10.1371/journal.pcbi.1004688. eCollection 2016 Feb. PLoS Comput Biol. 2016. PMID: 26866806 Free PMC article.
Universality of human microbial dynamics.
Bashan A, Gibson TE, Friedman J, Carey VJ, Weiss ST, Hohmann EL, Liu YY. Bashan A, et al. Among authors: liu yy. Nature. 2016 Jun 9;534(7606):259-62. doi: 10.1038/nature18301. Nature. 2016. PMID: 27279224 Free PMC article.
Mapping the ecological networks of microbial communities.
Xiao Y, Angulo MT, Friedman J, Waldor MK, Weiss ST, Liu YY. Xiao Y, et al. Among authors: liu yy. Nat Commun. 2017 Dec 11;8(1):2042. doi: 10.1038/s41467-017-02090-2. Nat Commun. 2017. PMID: 29229902 Free PMC article.
Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes.
Sharma A, Halu A, Decano JL, Padi M, Liu YY, Prasad RB, Fadista J, Santolini M, Menche J, Weiss ST, Vidal M, Silverman EK, Aikawa M, Barabási AL, Groop L, Loscalzo J. Sharma A, et al. Among authors: liu yy. NPJ Syst Biol Appl. 2018 Jul 3;4:25. doi: 10.1038/s41540-018-0057-0. eCollection 2018. NPJ Syst Biol Appl. 2018. PMID: 29977601 Free PMC article.
Deciphering functional redundancy in the human microbiome.
Tian L, Wang XW, Wu AK, Fan Y, Friedman J, Dahlin A, Waldor MK, Weinstock GM, Weiss ST, Liu YY. Tian L, et al. Among authors: liu yy. Nat Commun. 2020 Dec 4;11(1):6217. doi: 10.1038/s41467-020-19940-1. Nat Commun. 2020. PMID: 33277504 Free PMC article.
Challenges in benchmarking metagenomic profilers.
Sun Z, Huang S, Zhang M, Zhu Q, Haiminen N, Carrieri AP, Vázquez-Baeza Y, Parida L, Kim HC, Knight R, Liu YY. Sun Z, et al. Among authors: liu yy. Nat Methods. 2021 Jun;18(6):618-626. doi: 10.1038/s41592-021-01141-3. Epub 2021 May 13. Nat Methods. 2021. PMID: 33986544 Free PMC article.
2,901 results