Strauss CEM - Search Results

1

Protein remote homology detection and structural alignment using deep learning.

Hamamsy T, Morton JT, Blackwell R, Berenberg D, Carriero N, Gligorijevic V, Strauss CEM, Leman JK, Cho K, Bonneau R. Hamamsy T, et al. Among authors: strauss cem. Nat Biotechnol. 2024 Jun;42(6):975-985. doi: 10.1038/s41587-023-01917-2. Epub 2023 Sep 7. Nat Biotechnol. 2024. PMID: 37679542 Free PMC article.

2

The 2010 Rosetta developers meeting: macromolecular prediction and design meets reproducible publishing.

Renfrew PD, Campbell G, Strauss CE, Bonneau R. Renfrew PD, et al. PLoS One. 2011;6(8):e22431. doi: 10.1371/journal.pone.0022431. Epub 2011 Aug 31. PLoS One. 2011. PMID: 21909349 Free PMC article. No abstract available.

3

Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation.

Bonneau R, Strauss CE, Baker D. Bonneau R, et al. Proteins. 2001 Apr 1;43(1):1-11. doi: 10.1002/1097-0134(20010401)43:1<1::aid-prot1012>3.0.co;2-a. Proteins. 2001. PMID: 11170209

4

Better together: Elements of successful scientific software development in a distributed collaborative community.

Koehler Leman J, Weitzner BD, Renfrew PD, Lewis SM, Moretti R, Watkins AM, Mulligan VK, Lyskov S, Adolf-Bryfogle J, Labonte JW, Krys J; RosettaCommons Consortium; Bystroff C, Schief W, Gront D, Schueler-Furman O, Baker D, Bradley P, Dunbrack R, Kortemme T, Leaver-Fay A, Strauss CEM, Meiler J, Kuhlman B, Gray JJ, Bonneau R. Koehler Leman J, et al. Among authors: strauss cem. PLoS Comput Biol. 2020 May 4;16(5):e1007507. doi: 10.1371/journal.pcbi.1007507. eCollection 2020 May. PLoS Comput Biol. 2020. PMID: 32365137 Free PMC article. Review.

5

De novo prediction of three-dimensional structures for major protein families.

Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmström L, Robertson T, Baker D. Bonneau R, et al. J Mol Biol. 2002 Sep 6;322(1):65-78. doi: 10.1016/s0022-2836(02)00698-8. J Mol Biol. 2002. PMID: 12215415

6

Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology.

Malmström L, Riffle M, Strauss CE, Chivian D, Davis TN, Bonneau R, Baker D. Malmström L, et al. PLoS Biol. 2007 Apr;5(4):e76. doi: 10.1371/journal.pbio.0050076. PLoS Biol. 2007. PMID: 17373854 Free PMC article.

7

Automated prediction of CASP-5 structures using the Robetta server.

Chivian D, Kim DE, Malmström L, Bradley P, Robertson T, Murphy P, Strauss CE, Bonneau R, Rohl CA, Baker D. Chivian D, et al. Proteins. 2003;53 Suppl 6:524-33. doi: 10.1002/prot.10529. Proteins. 2003. PMID: 14579342

8

Rosetta in CASP4: progress in ab initio protein structure prediction.

Bonneau R, Tsai J, Ruczinski I, Chivian D, Rohl C, Strauss CE, Baker D. Bonneau R, et al. Proteins. 2001;Suppl 5:119-26. doi: 10.1002/prot.1170. Proteins. 2001. PMID: 11835488

9

Deriving topology and sequence alignment for the helix skeleton in low-resolution protein density maps.

Lu Y, He J, Strauss CE. Lu Y, et al. J Bioinform Comput Biol. 2008 Feb;6(1):183-201. doi: 10.1142/s0219720008003357. J Bioinform Comput Biol. 2008. PMID: 18324752

10

Engineered pH-Sensitive Protein G/IgG Interaction.

Jha RK, Yankey A, Shabazz K, Naranjo L, Shin SM, Velappan N, Bradbury ARM, Strauss CEM. Jha RK, et al. Among authors: strauss cem. ACS Chem Biol. 2021 Jul 16;16(7):1142-1146. doi: 10.1021/acschembio.0c00943. Epub 2021 Jun 21. ACS Chem Biol. 2021. PMID: 34152722

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