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Aligning Standards Communities for Omics Biodiversity Data: Sustainable Darwin Core-MIxS Interoperability.
Meyer R, Appeltans W, Duncan WD, Dimitrova M, Gan YM, Stjernegaard Jeppesen T, Mungall C, Paul DL, Provoost P, Robertson T, Schriml L, Suominen S, Walls R, Sweetlove M, Ung V, Van de Putte A, Wallis E, Wieczorek J, Buttigieg PL. Meyer R, et al. Among authors: schriml l. Biodivers Data J. 2023 Oct 3;11:e112420. doi: 10.3897/BDJ.11.e112420. eCollection 2023. Biodivers Data J. 2023. PMID: 37829294 Free PMC article.
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium; Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T. Bowers RM, et al. Among authors: schriml l. Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893. Nat Biotechnol. 2017. PMID: 28787424 Free PMC article.
Genomic reproducibility in the bioinformatics era.
Baykal PI, Łabaj PP, Markowetz F, Schriml LM, Stekhoven DJ, Mangul S, Beerenwinkel N. Baykal PI, et al. Among authors: schriml lm. Genome Biol. 2024 Aug 9;25(1):213. doi: 10.1186/s13059-024-03343-2. Genome Biol. 2024. PMID: 39123217 Free PMC article. Review.
A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics.
Eloe-Fadrosh EA, Mungall CJ, Miller MA, Smith M, Patil SS, Kelliher JM, Johnson LYD, Rodriguez FE, Chain PSG, Hu B, Thornton MB, McCue LA, McHardy AC, Harris NL, Reddy TBK, Mukherjee S, Hunter CI, Walls R, Schriml LM. Eloe-Fadrosh EA, et al. Among authors: schriml lm. Methods Mol Biol. 2024;2802:587-609. doi: 10.1007/978-1-0716-3838-5_20. Methods Mol Biol. 2024. PMID: 38819573
The DO-KB Knowledgebase: a 20-year journey developing the disease open science ecosystem.
Baron JA, Johnson CS, Schor MA, Olley D, Nickel L, Felix V, Munro JB, Bello SM, Bearer C, Lichenstein R, Bisordi K, Koka R, Greene C, Schriml LM. Baron JA, et al. Among authors: schriml lm. Nucleic Acids Res. 2024 Jan 5;52(D1):D1305-D1314. doi: 10.1093/nar/gkad1051. Nucleic Acids Res. 2024. PMID: 37953304 Free PMC article.
The founding charter of the Omic Biodiversity Observation Network (Omic BON).
Meyer R, Davies N, Pitz KJ, Meyer C, Samuel R, Anderson J, Appeltans W, Barker K, Chavez FP, Duffy JE, Goodwin KD, Hudson M, Hunter ME, Karstensen J, Laney CM, Leinen M, Mabee P, Macklin JA, Muller-Karger F, Pade N, Pearlman J, Phillips L, Provoost P, Santi I, Schigel D, Schriml LM, Soccodato A, Suominen S, Thibault KM, Ung V, van de Kamp J, Wallis E, Walls R, Buttigieg PL. Meyer R, et al. Among authors: schriml lm. Gigascience. 2022 Dec 28;12:giad068. doi: 10.1093/gigascience/giad068. Epub 2023 Aug 26. Gigascience. 2022. PMID: 37632753 Free PMC article.
Modeling the enigma of complex disease etiology.
Schriml LM, Lichenstein R, Bisordi K, Bearer C, Baron JA, Greene C. Schriml LM, et al. J Transl Med. 2023 Feb 25;21(1):148. doi: 10.1186/s12967-023-03987-x. J Transl Med. 2023. PMID: 36829165 Free PMC article.
94 results